Reposted by Richard Unwin
NEW PAPER:
Had a play comparing run length (and software) for DIA proteomics IN PLASMA (cos its not a cell lysate).
Tl;dr. If you're benchmarking workflows for differential abundance, checking how many true and false hits you get is a better readout than %CV.
pubs.acs.org/jprobs/artic...
pubs.acs.org
Benchmarking
ZenoSWATH-DIA and Rapid-Gradient Workflows
for Plasma Proteomics
Abstract. Proteomics is the large-scale study of proteins. Mass
spectrometry
(MS) is one of the most informative techniques for analyzing proteins.
Proteom