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QIIME 2 @qiime2.org · 02/07/2025

A lot is changing with our documentation, including a transition from a single-source to multiple sources. Learn more in this News post on the forum: forum.qiime2.org/t/the-qiime-... #qiime2 #bioinformatics #documentation #jupyterbook

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QIIME 2 @qiime2.org · 07/02/2025

For the QIIME 2 developers out there, here are the dependency version changes you can expect to see in the upcoming 2025.4 release - reach out if you need help updating your plugins! forum.qiime2.org/t/qiime-2-20...

forum.qiime2.org

QIIME 2 2025.4 breaking changes & environment files

Hello QIIME 2 Developer community! 🤓👋🏼 Below is the list of guaranteed interface changes, plugin API changes, and environment file updates for the 2025.4 QIIME 2 release. You can use the linked envir...

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QIIME 2 @qiime2.org · 14/11/2024

Do you use Zenodo for archiving QIIME 2 data for publications? We now support loading QIIME 2 Results (Artifacts and Visualizations) directly from Zenodo with QIIME 2 View. Check out the links in this Zenodo record, which references data from a new @cap-lab.bio pub: doi.org/10.5281/zeno...

doi.org

Upcycling Human Excrement: The Gut Microbiome to Soil Microbiome Axis (supporting data)

This archive contains the supporting data and code for Meilander et al., 2024: Upcycling Human Excrement: The Gut Microbiome to Soil Microbiome Axis. Clicking the links below will open the correspon...

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QIIME 2 @qiime2.org · 19/02/2024

Happy Monday! Start your week off w/ a new QIIME 2 release: @qiime2 2024.2. There's a lot in this one, including new parallel actions in the shotgun distribution, a fancy new visualizer (summarize-plus), for summarizing feature tables & performance enhancements and minor fixes throughout. Enjoy!

forum.qiime2.org

QIIME 2 2024.2 is now available!

The QIIME 2 2024.2 release is now available! Thanks to everyone involved for their hard work! 🙌🏼 🎉 As a reminder, our next planned QIIME 2 release is scheduled for May 2023 (QIIME 2 2023.5), but plea...

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Reposted by QIIME 2

Greg Caporaso @cap-lab.bio · 29/11/2023

QIIME 2 Provenance Replay auto-generates the code for creating QIIME 2 results from QIIME 2 results & builds "bioinformatics reproducibility supplements" for your papers. Our goal is to make it easy for you to perform reproducible, replicable & robust bioinformatics. doi.org/10.1371/jour...

Definitions of Reproducible, Replicable, Robust, and Generalizable in the context of data analysis.

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QIIME 2 @qiime2.org · 20/10/2023

#QIIME2 2023.9 is now available! Exciting updates include an alpha release of our shotgun #metagenomics distribution, fully integrated provenance replay within the framework, batched decontam analysis, and more! Thank you contributors!! forum.qiime2.org/t/qiime-2-20...

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