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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 02/10/2026

Mushal Zia, Faisal Suwayyid, Guo-Wei Wei: CANN: Commutative Algebra Neural Networks for Virus Classification arxiv.org/abs/2610.00283 arxiv.org/pdf/2610.00283 arxiv.org/html/2610.00283

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 02/10/2026

[2026-10-02 Fri (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 01/10/2026

Lukas Sch\"onmann, Heinz Himmelbauer, Juliane C. Dohm: MerKurio: sequence extraction and annotation based on matching k-mers arxiv.org/abs/2609.39830 arxiv.org/pdf/2609.39830 arxiv.org/html/2609.39830

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 01/10/2026

Suyuan Zhao, Minghao Liu, Yizhen Luo, Zaiqing Nie: CellMSA: Context Modeling for Single-Cell Representation Learning arxiv.org/abs/2609.38908 arxiv.org/pdf/2609.38908 arxiv.org/html/2609.38908

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 01/10/2026

Alice Wachira, Xiang Liu, Guo-Wei Wei: Fragment Path Complex Networks for Viral Genome Classification arxiv.org/abs/2609.38651 arxiv.org/pdf/2609.38651 arxiv.org/html/2609.38651

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 01/10/2026

[2026-10-01 Thu (UTC), 3 new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 30/09/2026

Johannes Schl\"uter, Alexander Sch\"onhuth: CancerZigZag: Iterative Seed-Anchored Diffusion for Generative Modeling of Single-Cell State Transitions arxiv.org/abs/2609.37735 arxiv.org/pdf/2609.37735 arxiv.org/html/2609.37735

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 30/09/2026

Safari, Arias, Lowe, Kari, Chang, Taylor: BarcodeMAE+: Rethinking Masked Pretraining and Global Representations for DNA Barcode Foundation Models arxiv.org/abs/2609.35877 arxiv.org/pdf/2609.35877 arxiv.org/html/2609.35877

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 30/09/2026

[2026-09-30 Wed (UTC), 2 new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 29/09/2026

[2026-09-29 Tue (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 28/09/2026

[2026-09-28 Mon (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 25/09/2026

Najla Abassi, Annekathrin Silvia Nedwed, Federico Marini: EMMA: an R/Bioconductor package to automate tracking of metadata in functional enrichment analyses arxiv.org/abs/2609.30013 arxiv.org/pdf/2609.30013 arxiv.org/html/2609.30013

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 25/09/2026

[2026-09-25 Fri (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 24/09/2026

Liangyu Li, Michael White: Motif-Vocab: StatisticallyCalibrated Transcription-Factor-Identity Tokenization forGenomic Language Models arxiv.org/abs/2609.28386 arxiv.org/pdf/2609.28386 arxiv.org/html/2609.28386

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 24/09/2026

[2026-09-24 Thu (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 23/09/2026

[2026-09-23 Wed (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 22/09/2026

[2026-09-22 Tue (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 21/09/2026

[2026-09-21 Mon (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 18/09/2026

Ghasemnejad, Argha, Grosser, Wang, Yang, Porntaveetus, Roscioli, Lovell, Aarabi, Alinejad-Rokny: Large Language Model Agents for Evidence Based Genetic Disease Severity Classification arxiv.org/abs/2609.19569 arxiv.org/pdf/2609.19569 arxiv.org/html/2609.19569

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 18/09/2026

[2026-09-18 Fri (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 17/09/2026

Strzoda, Cruz-Garcia, Najim, Badie, Polanska: STUART: Sequence Triage and qUAntification of Read Transcripts for Rapid Ionizing Radiation Exposure Assessment arxiv.org/abs/2609.19139 arxiv.org/pdf/2609.19139 arxiv.org/html/2609.19139

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 17/09/2026

Michael V. Westbury: PlainMap: a lightweight, restartable mapping pipeline for ancient and modern DNA arxiv.org/abs/2609.18372 arxiv.org/pdf/2609.18372 arxiv.org/html/2609.18372

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 17/09/2026

Rui Xiao, Yili Xu: Democratizing Clinical Tumor Whole Genome Sequencing: 18-hour End-to-end Analysis via Trillion-parameter Large Language Models Locally Deployed on Consumer-grade Hardware arxiv.org/abs/2609.17620 arxiv.org/pdf/2609.17620 arxiv.org/html/2609.17620

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 17/09/2026

Alexandros Tzanakakis, Aris Karatzikos, Ilias Georgakopoulos-Soares: Structure is not mechanism: high-gain gated-FFN rows across text and genomic foundation models arxiv.org/abs/2609.17599 arxiv.org/pdf/2609.17599 arxiv.org/html/2609.17599

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 17/09/2026

[2026-09-17 Thu (UTC), 4 new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 16/09/2026

[2026-09-16 Wed (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 15/09/2026

Liu, Zhang, Chen, Wang, Li, Qian, Zhu, Zhou, Wu, Zhang, Lin, Wu, Zheng: RAGCell: Retrieval-Augmented Generation as Supervision for Versatile Single-cell Analysis arxiv.org/abs/2609.14147 arxiv.org/pdf/2609.14147 arxiv.org/html/2609.14147

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 15/09/2026

[2026-09-15 Tue (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 14/09/2026

[2026-09-14 Mon (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 11/09/2026

[2026-09-11 Fri (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 10/09/2026

[2026-09-10 Thu (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 09/09/2026

Sai Jayakumar: A Transformer-Based Delta Expression Encoder for Psilocybin Transcriptional Response: Architecture, Representations, and Biological Validation arxiv.org/abs/2609.08165 arxiv.org/pdf/2609.08165 arxiv.org/html/2609.08165

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 09/09/2026

Isabella Caranzano, Daniel Maria Busiello, Stefano Priorelli, Amos Maritan, Piero Fariselli: Human mutation field reveals an equilibrium-like structure with irreversible circulation arxiv.org/abs/2609.07500 arxiv.org/pdf/2609.07500 arxiv.org/html/2609.07500

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 09/09/2026

[2026-09-09 Wed (UTC), 2 new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 08/09/2026

[2026-09-08 Tue (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 07/09/2026

[2026-09-07 Mon (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 04/09/2026

Messina, Remini, Bohrer, Fiche, Walter, Parmeggiani, Nollmann: Enhancer-promoter proximity predicts transcriptional competence but not transcriptional output in the Drosophila brain arxiv.org/abs/2609.03058 arxiv.org/pdf/2609.03058 arxiv.org/html/2609.03058

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 04/09/2026

[2026-09-04 Fri (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 03/09/2026

Zhen Zhou, Jiachen Li, Yuan Liu, Xiaoyong Pan, Hong-Bin Shen: Subcellularly Resolved Single-Cell Embedding Learning with Transcriptomic data, Protein Structure and Localization Information arxiv.org/abs/2609.02344 arxiv.org/pdf/2609.02344 arxiv.org/html/2609.02344

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 03/09/2026

[2026-09-03 Thu (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 02/09/2026

Handong Wang, Jiaxin Qi, Haochen Feng, Baisheng Lai: PopPert: Population-level Joint-Distribution Modeling for Single-Cell Perturbation Prediction arxiv.org/abs/2609.01357 arxiv.org/pdf/2609.01357 arxiv.org/html/2609.01357

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 02/09/2026

[2026-09-02 Wed (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 01/09/2026

Calvin McCarter: Confounder-Aware Feature Correction for Single-Cell Batch Integration arxiv.org/abs/2608.28849 arxiv.org/pdf/2608.28849 arxiv.org/html/2608.28849

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 01/09/2026

[2026-09-01 Tue (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 31/08/2026

[2026-08-31 Mon (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 28/08/2026

Xiao Xiao, Jiashu He, Shiyang Zhang, Meiyi Mao: Learning Interpretable Tumor Microenvironment Representations by Fitting Pan-Cancer Cell State-Niche Correlation arxiv.org/abs/2608.26208 arxiv.org/pdf/2608.26208 arxiv.org/html/2608.26208

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 28/08/2026

[2026-08-28 Fri (UTC), 1 new article found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 27/08/2026

[2026-08-27 Thu (UTC), no new articles found for q-bioGN Genomics]

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 26/08/2026

Zheng, Hong, Wang, Villain, Costallat, Montoya, Agarwal: Optimizing RNA yield using deep neural networks coupled to massively parallel screening arxiv.org/abs/2608.23722 arxiv.org/pdf/2608.23722 arxiv.org/html/2608.23722

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arXiv q-bio.GN Genomics @qbiogn-bot.bsky.social · 26/08/2026

[2026-08-26 Wed (UTC), 1 new article found for q-bioGN Genomics]

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