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Pinar Demetci

@pinard.bsky.social
82 followers 451 following 16 posts

Schmidt Center Postdoctoral Fellow @ Broad Institute of MIT and Harvard AI/ML for computational biology 💻 🧬🧪

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Pinar Demetci @pinard.bsky.social · 29/10/2025
Tune in for a great MIA talk on ML for regulatory genomics by @jmschreiber91.bsky.social and Gregory Andrews now! 🧪 broad.io/mia (Will also be available online on our YouTube playlist later: www.youtube.com/watch?v=sMTO...)
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Pinar Demetci @pinard.bsky.social · 02/04/2025
🧪 Super excited to host Gokcen Eraslan and Surag Nair from Genentech at MIA this Wednesday! They will describe a new multimodal masked modeling framework for functional genomics, which unifies sequence-to-function models, language models and synthetic sequence design. x.com/MIA_at_Broad...
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Pinar Demetci @pinard.bsky.social · 12/03/2025
Tomorrow, I am super excited to be hosting Ellen Zhong & Rishwanth Raghu from Princeton at the MIA seminar, who will discuss deep learning models to reconstruct 3D protein complexes and study biomolecular dynamics from 2D cryoEM/cryoET images 🧪https://x.com/MIA_at_Broad/status/1899195133201170569
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Anshul Kundaje @anshulkundaje.bsky.social · 25/12/2024
Our ChromBPNet preprint out! www.biorxiv.org/content/10.1... Huge congrats to Anusri! This was quite a slog (for both of us) but we r very proud of this one! It is a long read but worth it IMHO. Methods r in the supp. materials. Bluetorial coming soon below 1/
biorxiv.org
ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants
Despite extensive mapping of cis-regulatory elements (cREs) across cellular contexts with chromatin accessibility assays, the sequence syntax and genetic variants that regulate transcription factor (T...
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Brandon Amos @bdamos.bsky.social · 05/12/2024
hi everyone!! let's try this optimal transport again 🙃
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Ted Underwood @tedunderwood.com · 29/11/2024
I would put this even more strongly: open source AI is probably our only realistic chance to avoid a terrifying increase in concentration of power. I do not want to live in a world where the people with all the money also have all the intellectual power.
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