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Perrimon Lab

@perrimonlab.bsky.social
2.8K followers 6 following 44 posts

Dr. Norbert Perrimon's lab at Harvard Medical School researches functional genomics, cell circuitry, and tissue homeostasis in Drosophila melanogaster. perrimon.med.harvard.edu

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Perrimon Lab @perrimonlab.bsky.social · 18/09/2026
Lipids regulate export of lysosomal enzymes from the endoplasmic reticulum. Xia B, Han M, Park I, Perrimon N. Proc Natl Acad Sci U S A. 2026 Sep 22;123(38):e2616684123. doi: 10.1073/pnas.2616684123. Epub 2026 Sep 17. PMID: 42752232
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Perrimon Lab @perrimonlab.bsky.social · 30/08/2026
The Drosophila Secretome Yanhui Hu1, Nahid Ausrafuggaman, Jenna Kalina, Austin Veal, Mujeeb Qadiri, Ah-Ram Kim, Norbert Perrimon doi: doi.org/10.64898/202...
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Perrimon Lab @perrimonlab.bsky.social · 15/08/2026
Yanagawa K, Perrimon N. Extracellular vesicles in Drosophila and mammals: Conserved mechanisms and emerging functional roles. EXO. 2026;1(3):202615. doi: 10.70401/EXO.2026.0014. PMID: 42598228
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Perrimon Lab @perrimonlab.bsky.social · 07/08/2026
Lee, et al. (2026). Antigen presentation by CD40+ MHC-II+ astrocytes promotes CNS autoimmunity. Nature. doi: 10.1038/s41586-026-10860-6. PMID: 42557325
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Perrimon Lab @perrimonlab.bsky.social · 05/08/2026
In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila. Marques et al. Elife. 2026 Aug 18;14:RP109422. doi: 10.7554/eLife.109422.
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Perrimon Lab @perrimonlab.bsky.social · 04/08/2026
A pro-apoptotic selection strategy enables CRISPR screening in mosquitoes and identifies Lachesin as a chikungunya virus entry factor Anja C. M. de Bruin et al. bioRxiv 2026.07.31.742019; doi: doi.org/10.64898/202...
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Perrimon Lab @perrimonlab.bsky.social · 29/07/2026
Lachesin is a mosquito receptor for multiple arthritogenic alphaviruses Plung et al. bioRxiv 2026.07.28.741058; doi: doi.org/10.64898/202...
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Lachesin is a mosquito receptor for multiple arthritogenic alphaviruses
Arthritogenic alphaviruses cause acute febrile illnesses associated with rash and arthritis when they are transmitted to humans through the bite of infected mosquitoes. Among these, chikungunya virus (CHIKV), transmitted primarily through the bite of infected Aedes aegypti and Aedes albopictus mosquitoes, causes explosive outbreaks involving hundreds of thousands to millions of cases, with recent re-emergence in several global regions. While several cellular receptors that mediate alphavirus entry into mammalian cells have been identified, their mosquito counterparts remained unknown, largely due to a lack of functional genomics tools for these invertebrate species. Here, we established a CRISPR-based genetic screening platform in Aedes albopictus cells and used it to identify Lachesin, a conserved invertebrate cell adhesion molecule, as a receptor for CHIKV and multiple related alphaviruses including Semliki Forest virus (SFV), o'nyong-nyong virus (ONNV), Mayaro virus (MAYV), and Ross River virus (RRV). Lachesin depletion using RNA interference, anti-Lachesin antibody treatment, and soluble forms of Lachesin blocked CHIKV and SFV E2-E1 glycoprotein-mediated infection of mosquito cells. We show that alphavirus E2-E1 glycoproteins bind the first immunoglobulin domain of Lachesin, facilitating attachment and internalization of virus-like particles. Orthologs from divergent mosquito genera, but not from arachnids or other arthropods, also serve as alphavirus receptors, suggesting that cellular receptor binding is not the main obstacle to arthritogenic alphavirus vector host expansion. Our findings enhance understanding of the mechanisms of alphavirus emergence and vector competence and could aid in the development of broadly active, entry-targeted therapeutics against multiple alphaviruses that threaten public health. ### Competing Interest Statement A provisional patent has been filed by some of the co-authors based on findings reported in the manuscript. National Institutes of Health, https://ror.org/01cwqze88, AI182377, T32AI700245, T32GM008313, T32GM144273, R24AI120942, P41GM132087 Burroughs Wellcome Fund Richard and Susan Smith Family Foundation G. Harold & Leila Y. Mathers Foundation International Human Frontier Science Program Organization, RGP011/2023
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Perrimon Lab @perrimonlab.bsky.social · 27/07/2026
Hu, Y., Comjean, A., Gao, C., Veal, A., Yamamoto, S., Mohr, S.E. and Perrimon, N. (2026) DIOPT: the DRSC Integrative Ortholog Prediction Tool, 2026 update. Genetics. doi: 10.1093/genetics/iyag194. PMID: 42504133
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Perrimon Lab @perrimonlab.bsky.social · 04/07/2026
New paper: Lipid metabolism of hepatocyte-like cells supports intestinal tumor growth in Drosophila. Huang K, Miao T, Chen Y, Dantas E, Sanford J, Asara JM, Moon SJ, Hu Y, Wang K, Han M, Goncalves M, Perrimon N. Nat Commun. 2026 Jul 3. doi: 10.1038 s41467-026-75074-w.
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Perrimon Lab @perrimonlab.bsky.social · 01/05/2026
New paper: Streptomyces produce a diphtheria toxin-like exotoxin that targets insects. Xu et al.Nat Microbiol. 2026 Apr 30. doi: 10.1038/s41564-026-02315-5. Online ahead of print. PMID: 42062574
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Perrimon Lab @perrimonlab.bsky.social · 29/04/2026
New paper: Bosch, J. A. et al. (2026) Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking. Nat Commun. doi: 10.1038/s41467-026-71763-8. PMID: 42009678
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Perrimon Lab @perrimonlab.bsky.social · 29/04/2026
Miao, T., Liu, Y., Qadiri, M., Dasseux, A., Asara, J. M., Hu, Y., Sun, X., Pliego-Alcántara, LDC., Dibble, C. and Perrimon, N. (2026) Renal coenzyme A (CoA) production from Vitamin B5 fuels stem cell proliferation and tumor growth. Nat Commun. doi: 10.1038/s41467-026-71716-1.
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Perrimon Lab @perrimonlab.bsky.social · 14/04/2026
hms.harvard.edu/news/not-wan...
hms.harvard.edu
Not Wanting To Eat Protein May Be Early Herald of Cancer Cachexia
Study in fruit flies uncovers earliest known sign of impending muscle and fat wasting
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Perrimon Lab @perrimonlab.bsky.social · 07/04/2026
Han. M., Xia, B., Kim, A-R., Filine, E., Stoneburner, E., Miao, T., Liu, Y., Zirin, J. and Perrimon, N. (2026) Phage display-mediated immuno-PCR to detect low-abundance secreted proteins in Drosophila. PNAS. 14;123(15):e2531777123. doi: 10.1073/pnas.2531777123. PMID: 41941621
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Perrimon Lab @perrimonlab.bsky.social · 07/03/2026
Petsakou, A., Filine. E., Li, M., Zheng, A., and Perrimon, N. (2026) Tumor-induced orexigenic imbalance lowers protein appetite and drives early organ wasting symptoms. Nature Communications. doi: 10.1038/s41467-026-70074-2. PMID: 41792134
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Perrimon Lab @perrimonlab.bsky.social · 18/02/2026
Cholinergic signaling modulates intestinal pathophysiology in a drosophila model of cystic fibrosis. Lane EA, Petsakou A, Liu Y, Chen W, Qadiri M, Hu Y, Perrimon N. PLoS Genet. 2026 Feb 17;22(2):e1012048. doi: 10.1371/journal.pgen.1012048. Online ahead of print. PMID: 41701793
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Perrimon Lab @perrimonlab.bsky.social · 28/01/2026
Ewen-Campen, B., Chen, W., Tattikota, S. G., Liu, Y., Hu, Y. and Perrimon, N. (2026) The Drosophila proventriculus lacks stem cells but compensates for age-related cell loss via endoreplication-mediated cell growth. bioRxiv 2025.06.27.662004; Nat Com. doi: 10.1038/s41467-026-68876-5. PMID: 41593082
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Perrimon Lab @perrimonlab.bsky.social · 19/01/2026
Moon, Hu, Dzieciatkowska, Kim, Asara, D'Alessandro and Perrimon (2026) Modeling tissue-specific Drosophila metabolism identifies high sugar diet-induced metabolic dysregulation in muscle at reaction and pathway levels. Nat Comm. doi: 10.1038/s41467-026-68395-3.
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Perrimon Lab @perrimonlab.bsky.social · 13/12/2025
Marques et al. (2025) In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila. eLife14:RP109422https://doi.org/10.7554/eLife.109422.1
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Perrimon Lab @perrimonlab.bsky.social · 27/11/2025
Lin, Deng, Gao, Tan, Zhong, Tan, Tan, Virshup, Bosch, Perrimon and Wang (2026) Microproteins Simba1 and Simba2 activate Wingless signaling during the reactivation of neural stem cells in Drosophila. Nat. Comm. doi: 10.1038/s41467-025-66727-3. PMID: 41298547
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Perrimon Lab @perrimonlab.bsky.social · 25/11/2025
Mameli, Samantsidis, Viswanatha, Kwon, Hall, Butnaru, Hu., Y., Mohr, Perrimon and Smith (2025) A genome-wide CRISPR screen in Anopheles mosquito cells identifies fitness and immune cell function-related genes. 16(1):10323. doi: 10.1038/s41467-025-65304-y. PMID: 41285753
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Perrimon Lab @perrimonlab.bsky.social · 12/11/2025
Huang, K. and Perrimon, N. (2025) Metabolic command centers in Drosophila: How the fat body and oenocytes orchestrate immunity, reproduction, and aging. Current Opinion in Insect Science. 101459. doi: 10.1016/j.cois.2025.101459. PMID: 41218693
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Perrimon Lab @perrimonlab.bsky.social · 01/11/2025
New paper: Phage display-mediated immuno-PCR to detect low-abundance secreted proteins in Drosophila Han, Xia, Ah-Ram Kim, Filine, Stoneburner, Miao, Liu, Zirin, Perrimon bioRxiv 2025.10.31.685841; doi: doi.org/10.1101/2025...
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Phage display-mediated immuno-PCR to detect low-abundance secreted proteins in Drosophila
Circulating hormones, that mediate communications across organs to maintain physiological balance, are commonly detected and quantified using enzyme-linked immunosorbent assays (ELISAs). However, whil...
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Perrimon Lab @perrimonlab.bsky.social · 12/10/2025
New paper: A Structure-Guided Kinase-Transcription Factor Interactome Atlas Reveals Docking Landscapes of the Kinome Kim, Huang, Johnson, Yaron-Barir, Keven Wang, Cantley, Hu, Perrimon bioRxiv 2025.10.10.681672; doi: doi.org/10.1101/2025...
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A Structure-Guided Kinase-Transcription Factor Interactome Atlas Reveals Docking Landscapes of the Kinome
Protein kinases orchestrate cellular processes through phosphorylation, yet the structural basis for their specific binding partner interactions remains largely unmapped. Here, we present a structure-...
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Perrimon Lab @perrimonlab.bsky.social · 09/10/2025
New paper: A family of lethal exotoxins defined by cell entry via the Attractin receptor Viswanatha, Lee, Robins, Mameli, Hu, Kim, Hashmi, Hiroshi , Prakash, Butnaru, Churchman, Mohr, Mekalanos, Perrimon doi: doi.org/10.1101/2025...
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A family of lethal exotoxins defined by cell entry via the Attractin receptor
Although bacterial genomes encode numerous potential toxins, it is unclear how evolution drives the specificity of these important virulence factors. Using an insect CRISPR screen, we identified the t...
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Perrimon Lab @perrimonlab.bsky.social · 04/10/2025
New paper: Hepatic ceramide synthesis links systemic inflammation to organelle dysfunction in cancer Liu, Miao, Wang, Ezequiel, Kim, Zhang, Sun, Binari, Asara, Yanhui Hu, Goncalves, Janowitz, Perrimon doi: doi.org/10.1101/2025...
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Hepatic ceramide synthesis links systemic inflammation to organelle dysfunction in cancer
Paraneoplastic syndromes arise when tumor-derived cytokines reprogram distant organs. Although mediators such as Interleukin-6 have been implicated, how these signals impair host organ function remain...
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Perrimon Lab @perrimonlab.bsky.social · 16/09/2025
ww.nbcnews.com/science/science-news/trumps-harvard-cuts-threaten-giant-biomedical-research-community-datab-rcna230610
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Perrimon Lab @perrimonlab.bsky.social · 09/09/2025
www.thecrimson.com/article/2025... Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research
thecrimson.com
Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research | News | The Harvard Crimson
FlyBase lost a multimillion dollar grant when the Trump administration cut off Harvard’s federal funding in May. Now the repository is laying off staff — and researchers worldwide are worried.
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Perrimon Lab @perrimonlab.bsky.social · 15/08/2025
gsas.harvard.edu/news/better-...
gsas.harvard.edu
A Better Way to Treat Obesity
PhD student Muhammad Ahmad has pinpointed important genes that regulate the retention and burning of fat in fruit flies and mammalian cells. His goal? To develop gene-editing therapies that could be a...
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Perrimon Lab @perrimonlab.bsky.social · 13/08/2025
www.thetransmitter.org/community/ha...
thetransmitter.org
Exclusive: Harvard University lays off fly database team
The layoffs jeopardize this resource, which has served more than 4,000 labs for about three decades.
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Perrimon Lab @perrimonlab.bsky.social · 12/08/2025
Renal Coenzyme A (CoA) Production Fuels Stem Cell Proliferation and Tumor Growth Ting Miao, Ying Liu, Mujeeb Qadiri, John M. Asara, Yanhui Hu, Xiaomei Sun, Christian Dibble, Norbert Perrimon bioRxiv 2025.08.08.669325; doi: doi.org/10.1101/2025...
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Renal Coenzyme A (CoA) Production Fuels Stem Cell Proliferation and Tumor Growth
Coenzyme A (CoA), derived from Vitamin B5 (VB5), is essential for lipid metabolism, energy production, and cell proliferation. While the intracellular functions of CoA are well characterized, its tiss...
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Perrimon Lab @perrimonlab.bsky.social · 08/08/2025
A Genome-wide CRISPR Screen Reveals ZDHHC8-Dependent Gαq Palmitoylation as a Key Regulator of GPCR Signaling Muhammad Ahmad, Norbert Perrimon, Raghuvir Viswanatha, Ah-Ram Kim bioRxiv 2025.08.06.668953; doi: doi.org/10.1101/2025...
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A Genome-wide CRISPR Screen Reveals ZDHHC8-Dependent Gαq Palmitoylation as a Key Regulator of GPCR Signaling
G protein-coupled receptors (GPCRs) that couple to the Gαq signaling pathway control diverse physiological processes, yet the full complement of cellular regulators for this pathway remains unknown. H...
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Perrimon Lab @perrimonlab.bsky.social · 01/08/2025
Cheng, C., Liu, Y., Chen, Y., Li, J., Xu, W., Perrimon, N. and Song, W. (2025) The power of Drosophila in modeling cancer cachexia. Adv Exp Med Biol. 482:83-100. doi: 10.1007/978-3-031-97035-1_5. PMID: 40745137
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Perrimon Lab @perrimonlab.bsky.social · 28/07/2025
Intersecting experimental evolution and CRISPR screens to identify novel insecticide resistance loci Marconcini, Cruchet, Goswami, Viswanatha, Butnaru, De, Roselli, Hadjieconomou, Perrimon, Mohr, Benton bioRxiv 2025.07.23.666417; doi: doi.org/10.1101/2025...
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Intersecting experimental evolution and CRISPR screens to identify novel insecticide resistance loci
Understanding the evolution of insect resistance to natural and artificial poisons is important both to appreciate the adaptation of species to toxic ecological niches and manage pest insects. While r...
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Perrimon Lab @perrimonlab.bsky.social · 16/07/2025
ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species. Song Y, Hu Y, Dow J, Perrimon N, Papatheodorou I. Bioinformatics. 2025 Jul 1;41(Supplement_1):i571-i579. doi: 10.1093/bioinformatics/btaf195. PMID: 40662793
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Perrimon Lab @perrimonlab.bsky.social · 15/07/2025
New Paper: Viswanatha , Entwisle, Hu, Kim, Reap, Butnaru, Qadiri, Mohr, Perrimon Higher resolution pooled genome-wide CRISPR knockout screening in Drosophila cells using integration and anti- CRISPR (IntAC) Nature Communications doi.org/10.1038/s414...
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Higher resolution pooled genome-wide CRISPR knockout screening in Drosophila cells using integration and anti-CRISPR (IntAC) - Nature Communications
Genome-wide CRISPR screens map how genes support survival and contribute to diverse biological functions. Here, the authors use antiCRISPR to enhance genome-wide CRISPR screening in Drosophila and gen...
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Perrimon Lab @perrimonlab.bsky.social · 12/07/2025
New paper: Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking Bosch et al. doi: doi.org/10.1101/2025...
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Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking
Secreted proteins regulate many aspects of animal biology and are attractive targets for biomarkers and therapeutics. However, comprehensively identifying the "secretome", along with their tissues of ...
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Perrimon Lab @perrimonlab.bsky.social · 06/07/2025
New paper: Cholinergic Signaling Modulates Intestinal Pathophysiology in a Drosophila Model of Cystic Fibrosis Elizabeth Lane, Afroditi Petsakou, Ying Liu, Weihang Chen, Mujeeb Qadiri, Yanhui Hu, Norbert Perrimon doi: doi.org/10.1101/2025...
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Cholinergic Signaling Modulates Intestinal Pathophysiology in a Drosophila Model of Cystic Fibrosis
Cystic Fibrosis (CF) is a monogenic genetic disease caused by mutations in the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) chloride/bicarbonate channel, which is expressed in certain epithelia cells. Current therapies focus on restoring CFTR function but many gut-related pathologies persist, highlighting the need for complementary treatments to improve the quality of life of patients living with CF. In this study, we use Drosophila melanogaster as a model to investigate the gut-specific effects of Cftr loss. We demonstrate that enterocyte-specific knockdown of Cftr in flies recapitulates several CF pathologies, including reduced intestinal motility, nutrient malabsorption, and decreased energy stores. Using single-nuclei RNA sequencing (snRNA-seq), we identify significant transcriptional changes in the CF model gut, including the upregulation of acetylcholine esterase (Ace, human AChE), which leads to reduced cholinergic signaling. Cholinergic signaling has been shown to affect CFTR function but this is the first time CFTR loss of function has been shown to alter cholinergic signaling. Functional assays confirm that cholinergic sensitivity is diminished in CF guts and restoring cholinergic signaling via Ace knockdown rescues multiple CF-associated phenotypes. Furthermore, we identify the transcription factor Forkhead (Fkh), the Drosophila homolog of human FOXA1/FOXA2, which is known to be a positive regulator of Cftr in the intestine, as a positive regulator of Ace expression in CF guts. This study establishes the Drosophila gut as a powerful model to investigate CF pathogenesis, genetic modifiers, and identifies Ace and Fkh as genetic modifiers. This work also suggests that enhancing cholinergic signaling may represent a viable therapeutic strategy for gastrointestinal manifestations of CF. ### Competing Interest Statement The authors have declared no competing interest. NIDDK, 5F32DK130290-03 Cystic Fibrosis Foundation, https://ror.org/00ax59295, LANE21F0-00816F221
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Perrimon Lab @perrimonlab.bsky.social · 02/07/2025
New paper: Ben Ewen-Campen, Weihang Chen, Sudhir Gopal Tattikota, Ying Liu, Yanhui Hu, Norbert Perrimon The Drosophila proventriculus lacks stem cells but compensates for age-related cell loss via endoreplication-mediated cell growth doi: doi.org/10.1101/2025...
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The Drosophila proventriculus lacks stem cells but compensates for age-related cell loss via endoreplication-mediated cell growth
The Drosophila proventriculus is a bulb-shaped structure at the juncture of the foregut and the midgut, which plays important roles in ingestion, peritrophic membrane synthesis, and the immune respons...
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Perrimon Lab @perrimonlab.bsky.social · 10/05/2025
Kang et al. (2025) NF-κB-mediated developmental delay extends lifespan in Drosophila PNAS. 122(19):e2420811122. doi: 10.1073/pnas.2420811122.
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Perrimon Lab @perrimonlab.bsky.social · 09/05/2025
Xiao, G. et al. (2025). Intratumor HIF-1a modulates production of a cachectic ligand to cause host wasting. Cell Insight. doi: 10.1016/j.cellin.2025.100247. PMID: 40336592
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Perrimon Lab @perrimonlab.bsky.social · 02/05/2025
TF2TG: an online resource mining the potential gene targets of transcription factors in Drosophila. Hu Y, Rodiger J, Liu Y, Gao C, Liu Y, Qadiri M, Veal A, Bulyk ML, Perrimon N. Genetics. 2025 May 2:iyaf082. doi: 10.1093/genetics/iyaf082. Online ahead of print. PMID: 40314147
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Perrimon Lab @perrimonlab.bsky.social · 25/04/2025
Hepatic gluconeogenesis and PDK3 upregulation drive cancer cachexia in flies and mice. Liu, Dantas, Ferrer, Miao T, Qadiri, Liu, Comjean , Davidson, Perrier, Ahmed, Hu, Goncalves, Janowitz, Perrimon. Nat Metab. 2025 doi: 10.1038/s42255-025-01265-2. PMID: 40275022
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Perrimon Lab @perrimonlab.bsky.social · 14/04/2025
New publication! Sex and Depot Specific Adipocyte Proteome Profiling In Vivo via Intracellular Proximity Labeling. Simonian TL, Meyer AS, Guo J, Sha J, Wohlschlegel JA, Droujinine IA, Perrimon N, McMahon AP. Compr Physiol. 2025 Apr;15(2):e70007. doi: 10.1002/cph4.70007. PMID: 40181252
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