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pefren.bsky.social

@pefren.bsky.social

pefren.bsky.social @pefren.bsky.social · 18/08/2026

🌱 Nuevas herramientas en #RStats para biodiversidad y taxonomía Seguimos ampliando nuestro ecosistema de herramientas abiertas y reproducibles para trabajar con datos taxonómicos, filogenómicos y de biodiversidad. 🧵 Cuatro proyectos, dos actualizaciones y dos nuevos paquetes 👇

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Brian J. Enquist @bjenquist.bsky.social · 24/03/2026

Our new #BIEN biodiversity data workflow paper is out! BIEN is an ecosystem of modular, open-source BIEN tools for collecting, harmonizing, and validating biodiversity data -- and an integrated global database (BIEN db) of plant occurrences, traits & geographic ranges. doi.org/10.1111/2041... 🧪🌐🌾🌵

doi.org

BIEN: A biodiversity informatics ecosystem advancing open and reproducible workflows for plant observation, plot and trait data

The rapid expansion of biodiversity data presents new opportunities to understand and forecast biosphere dynamics. However, disparate and dispersed data, taxonomic and geographic inconsistencies, ...

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Reposted by @pefren.bsky.social

ForestPlots @forestplots.bsky.social · 23/01/2026

Tree diversity is changing in the Amazon and Andes. Belen Fadrique leads our analysis in @natecoevo.nature.com w/ 400 plots + 40 years of RAINFOR records. www.nature.com/articles/s41... Hot, drier, more fragmented forests are losing species. Many in the Andes + western Amazon are gaining them.

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Joseph Gaudard @jogaudard.bsky.social · 25/09/2025

My first PhD paper is out! It describes the fluxible #rstats package, a toolbox to process and quality check #ecosystem #gasfluxes in a reproducible and automated way. @unibergen.bsky.social @btwnthefjords-uib.bsky.social @bjerknes.uib.no @li-corenv.bsky.social @methodsinecoevol.bsky.social

doi.org

fluxible: An R package to process ecosystem gas fluxes from closed‐loop chambers in an automated and reproducible way

Measuring ecosystem gas fluxes is crucial to understanding the dynamics of ecosystem water and energy cycling. A common method to measure ecosystem gas fluxes (CO2, CH4, N2O) and to compare experi...

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Francisco Rodriguez-Sanchez @frodsan.bsky.social · 21/01/2025

Actual code sharing remains terribly low in ecology (source: doi.org/10.1002/ece3...)

Temporal trends of open-access publications (open publication), open data, and code sharing (open code) between 2010 and 2022. Sample size was 77 papers per year, 1001 total. The lines show trends in each open-science component over time, with dashed lines representing non-significant trends, and solid lines indicating significance. Open data (p = 1.48e-06) and code sharing (p = .00157) increased significantly over time, while open-access publications (p = .926) had no statistically significant relationship.

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