iiinova — where your digital self keeps evolving

OME @openmicroscopy.org · 31/03/2026

Idr0167: Predicting cell cycle stage from 3D single-cell nuclear-stained images from www.life-science-alliance.org/content/8/6/... by Li et al. idr.openmicroscopy.org/search/?quer...

000

OME @openmicroscopy.org · 31/03/2026

Idr0171: Experimental and machine learning-based exploration of repurposed drugs reveals chemical features underlying phospholipidosis from www.sciencedirect.com/science/arti... by Kuzikov et al. idr.openmicroscopy.org/search/?quer...

100

OME @openmicroscopy.org · 26/02/2026

We have integrated the Allen Institute's BioFile Finder app with IDR. You can quickly Group and Filter all images in a study. Data is served by the IDR search engine and supports up to a million images at a time. BioFile Finder links are on each study page e.g. idr.openmicroscopy.org/study/idr0056/

1166

OME @openmicroscopy.org · 21/11/2025

Idr0173: Released ahead of its publication - Early Parkinson’s disease is defined by α-synuclein oligomer-driven aggregation susceptible cells by Breiter et al. Images in idr0173 are OME-Zarrs converted by the submitter. idr.openmicroscopy.org/search/?quer...

000

OME @openmicroscopy.org · 21/11/2025

Idr0168: Prediction of protein subcellular localization in single cells from www.nature.com/articles/s41... by Zhang et al. Images in idr0168 are OME-Zarrs converted by the submitter. idr.openmicroscopy.org/search/?quer...

101

OME @openmicroscopy.org · 06/08/2025

BioFile Finder allows the browsing of image thumbnails which enables launching of images in full view via a range of image viewers. We hope this is useful!

020

OME @openmicroscopy.org · 06/08/2025

Example idr0170 image shown in OME-NGFF-Validator: ome.github.io/ome-ngff-val...

120

OME @openmicroscopy.org · 06/08/2025

Idr0170: Released ahead of its publication - Imaging Mass Cytometry Dataset of Small-Cell Lung Cancer tumors and tumor microenvironments by Rose et al. Images in idr0170 are OME-Zarrs converted by the submitter. idr.openmicroscopy.org/search/?quer...

110

OME @openmicroscopy.org · 25/07/2025

New landing pages have landed for every study in the Image Data Resource (IDR)! Now, you can easily see clear details of the study - including how to download the data! To access the landing page for a study, just click on its thumbnail from the homepage (idr.openmicroscopy.org).

151

OME @openmicroscopy.org · 10/07/2025

New study released in the Image Data Resource (IDR, idr.openmicroscopy.org) today! An embryonic patterning study from elifesciences.org/articles/78902 by Clark et al. idr.openmicroscopy.org/search/?quer...

010

OME @openmicroscopy.org · 19/06/2025

The #globalbioimaging couse at IISER Pune continued with an intense and well-received OMERO workshop part 1. The parts 2 and 3 of the OMERO workshoop to come tomorrow.

141

OME @openmicroscopy.org · 18/06/2025

On the #globalbioimaging course globalbioimaging.org/internationa... at IISER Pune, India, the discussions go on after the talk about Microscopy Facility Data Management strategies.

010

OME @openmicroscopy.org · 04/06/2025

On #ELMI2025 an ad-hoc Question&Answer session on OMERO went very well, lively discussion with lot of tips on finding the optimal path to successful OMERO adoption in an Institution.

051

OME @openmicroscopy.org · 09/05/2025

3. Gene expression data from onlinelibrary.wiley.com/doi/10.1111/... by Alzu'bi et al. idr.openmicroscopy.org/search/?quer...

011

OME @openmicroscopy.org · 09/05/2025

2. A morphology and secretome map of pyroptosis from the recently published www.molbiolcell.org/doi/10.1091/... by Lippincott et al. idr.openmicroscopy.org/search/?quer...

110

OME @openmicroscopy.org · 09/05/2025

Take a look at the three new studies released in the Image Data Resource (IDR, idr.openmicroscopy.org). 1. 3D-SIM data from www.nature.com/articles/s41... by Szabo et al. idr.openmicroscopy.org/search/?quer...

120

OME @openmicroscopy.org · 21/02/2025

2. Large-scale hyperspectral #electronmicroscopy data from www.nature.com/articles/s44... by Duinkerken et al. idr.openmicroscopy.org/search/?quer...

000

OME @openmicroscopy.org · 21/02/2025

Take a look at the two new studies released in the Image Data Resource (IDR, idr.openmicroscopy.org). 1. Light sheet fluorescence microscopy of Tribolium castaneum embryos from journals.biologists.com/dev/article/... by Strobl et al. idr.openmicroscopy.org/search/?quer...

011

OME @openmicroscopy.org · 06/12/2024

The one-day OMERO workshop given as a part of the Imaging course organized by CEITEC - Central European Institute of Technology, Brno, just ended. Very intesive workshop with lively discussions about IDR metadata and OMERO.figure.

131

OME @openmicroscopy.org · 27/11/2024

The recent OMERO.server 5.6.14 release included a bunch of new Look-up tables listed at github.com/ome/openmicr... to add to a growling list! Thanks to Tom Boissonnet and @gerbi.bsky.social

163