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Oliver Meacock

@olimeacock.bsky.social
382 followers 201 following 42 posts

{Microbiology ∩ ecology ∩ physics}. Research fellow @sheffielduni.bsky.social. Alumnus of the labs of @saramitri.bsky.social, Mack Durham and Kevin Foster. Lab website: sites.google.com/sheffield.ac.uk/mi…

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Reposted by Oliver Meacock
PLOS Biology @plosbiology.org · 20/07/2026
Sublinear #DensityDependence is widely reported empirically, but is at odds with theory. @jamesaorr.bsky.social &co use a tightly controlled test in a microbial model system to reveal superlinear density dependence, so aligning empirical evidence with theory @plosbiology.org 🧪 plos.io/4vwAmEZ
Top: Schematic of the empirical application of growth-density inversion, where the classic density dependence perspective (blue) is inverted (green) to overcome the challenges of manipulating densities. The authors first parametrised a consumer-resource model using batch culture growth assays (Approach 1) and performed growth-density inversion analytically (Box 1). Then, in a model-free empirical implementation of growth-density inversion, they experimentally manipulated harvest rate and quantified densities at equilibrium by varying the dilution rate in a chemostat system (Approach 2). Bottom left: Parametrised Monod growth function with 100 posterior draws representing uncertainty. The inset shows the analytical prediction for the density dependence of this parametrised consumer–resource model. Bottom right: Inverse-logistic model fitted to the experimental data with 95% credible intervals. Inset shows the same data and model with axes inverted to give the classic density dependence perspective.
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Michael Sieber @michaelsieber.bsky.social · 01/07/2026
Have ideas for your own, independent research program in Theoretical Biology? Then come and join us as a Group Leader at the @mpi-evolbio.bsky.social in Plön, Germany!
mpg.de
Group Leader in Theoretical Biology (m/f/d)
Experience in Theoretical Biology, Applied Mathematics, Theoretical Physics
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Faculté de biologie et de médecine @fbm-unil.bsky.social · 23/06/2026
🎉 Félicitations aux professeures 𝗦𝗮𝗿𝗮 𝗠𝗶𝘁𝗿𝗶 @saramitri.bsky.social @dmf-unil.bsky.social et 𝗧𝗮𝗻𝗷𝗮 𝗦𝗰𝗵𝘄𝗮𝗻𝗱𝗲𝗿 au Département d’écologie et évolution @fbm-unil.bsky.social @unil.bsky.social qui reçoivent chacune un ERC Advanced Grant @erc.europa.eu 👉 www.unil.ch/news/fr/1781...
unil.ch
Deux ERC Advanced Grants pour la FBM
Les professeures Sara Mitri, au Département de microbiologie fondamentale, et Tanja Schwander, au Département d’écologie et évolution de l’Unil, reçoivent chacune un ERC Advanced Grant de l’European R...
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
With thanks to @hfspo.bsky.social, @molmicrosheffield.bsky.social, NCCR microbiomes, @snsf.ch and @dmf-unil.bsky.social
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
We see the resolution to this paradox as only the beginning. The tools we can build through this mapping promise to unblock a lot of research avenues in EcoEvo - excited to share these with you soon!
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
This mapping between mechanisms is also behind our ability to add Modern Coexistence Theory to our analysis, providing mechanistic insights into coexistence outcomes in this system
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
The upshot is that as these two effects occur in tandem, both stability and population sizes increase - exactly what previous researchers have seen in experiments
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
Read the manuscript to find out why this happens, but the key point is that our gLV-based intuitions don't necessarily hold here. Strengthening costly, cooperative mechanisms can make effective interactions more negative and effective intrinsic growth rates more positive
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
The answer to this is perhaps the most surprising result of the paper - the quantities that look like intrinsic growth rates (the abiotic accelerations) become increasingly positive. This is despite the fact that increasing secretion rates is costly
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
It turns out that the terms that look like interactions strengths (the biotic accelerations) become more and more competitive. While you can explain this as arising from increased competition over shared resources, this doesn't explain why this doesn't also result in suppressed population sizes
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
So - that's our new theoretical tool. We applied this to a cross-feeding model of auxotrophic bacteria need each others' secretions and asked: what happens as we dial up the rate at which those secretions are produced?
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
The upshot is that there are a lot of theorems used to study the gLV equation at equilibrium which can now be ported to mechanistic models simply by swapping in acceleration-based terms in place of rate-based terms. This turns out to be very useful
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
Now, it should be emphasised that this is not gLV. It's a second-order differential equation, unlike gLV's first-order definition. But at equilibrium (which is 90% of what theorists care about) the two equations are algebraically identical
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
By expressing your mechanisms in very general functional terms, you can show this results in a gLV-like equation for a huge range of mechanistic models - including cross-feeding systems!
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
It turns out that the trick is to *not* separate timescales. This means you combine the rates of the resource dynamics and the growth rates, resulting in growth accelerations - i.e. a measurement of how quickly the growth rate is changing
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
This model is purely competitive and assumes resources are themselves biotic, which means it's not great for representing cooperative exchanges between microbes of abiotic resources like amino acids. We need to find a different approach
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
With this, the algebra falls out juuust right so you get gLV-like constants expressed as composites of mechanistic parameters. But, as discussed in the above paper, this only really works for MacArthur's model
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
This isn't a new idea - MacArthur did this for his consumer-resource model back in 1969. The general approach is to assume that the resources equilibrate much more quickly than the consumers - the 'separation of timescales' assumption
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
(To be clear what I mean here - mechanistic models explicitly represent processes like cross feeding and nutrient competition through the shared chemical environment of bacterial populations, while the gLV model is a phenomenological framework in which these processes are abstracted out)
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
To reconcile these two perspectives, it would be useful to be able to write explicit models of the mechanisms through which cells interact (cross-feeding, nutrient competition etc.) in a gLV-like form. The idea is laid out nicely in this paper from @jpodwyer.bsky.social: doi.org/10.1007/s120...
doi.org
Whence Lotka-Volterra? - Theoretical Ecology
Competition in ecology is often modeled in terms of direct, negative effects of one individual on another. An example is logistic growth, modeling the effects of intraspecific competition, while the Lotka-Volterra equations for competition extend this to systems of multiple species, with varying strengths of intra- and interspecific competition. These equations are a classic and well-used staple of quantitative ecology, providing a framework to understand species interactions, species coexistence, and community assembly. They can be derived from an assumption of random mixing of organisms, and an outcome of each interaction that removes one or more individuals. However, this framing is somewhat unsatisfactory, and ecologists may prefer to think of phenomenological equations for competition as deriving from competition for a set of resources required for growth, which in turn may undergo their own complex dynamics. While it is intuitive that these frameworks are connected, and the connection is well-understood near to equilibria, here, we ask the question: when can consumer dynamics alone become an exact description of a full system of consumers and resources? We identify that consumer-resource systems with this property must have some kind of redundancy in the original description, or equivalently there is one or more conservation laws for quantities that do not change with time. Such systems are known in mathematics as integrable systems. We suggest that integrability in consumer-resource dynamics can only arise in cases where each species in an assemblage requires a distinct and unique combination of resources, and even in these cases, it is not clear that the resulting dynamics will lead to Lotka-Volterra competition.
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
This quickly runs into problems however. We focus in this paper on an increasingly apparent paradox: cooperative cross-feeding mechanisms are very widespread, but results from the gLV model suggest that cooperation should destabilise ecosystems and cause species to go extinct
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
This work stems from a question we've been asking ourselves for a few years now - how can we define interactions quantitatively? If you want to understand ecosystem properties, there's an obvious framework: generalised Lotka-Volterra (gLV)
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
For those who prefer graphs - we can also map arbitrary mechanisms onto the axes of Modern Coexistence Theory This might sound like it's for people with niche interests (ha) but it's a major simplification - we can boil complex mechanisms down to two numbers which completely determine coexistence
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Oliver Meacock @olimeacock.bsky.social · 11/06/2026
New preprint from @saramitri.bsky.social and me: tinyurl.com/3dsjnm4d The headline result - we derive a general way to connect mechanistic ecosystem models to the gLV equation. This reveals that strengthening cooperative mechanisms can make effective gLV interactions increasingly competitive. Weird!
doi.org
Emergent competition resolves the paradox of stable microbial mutualisms
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Oliver Meacock @olimeacock.bsky.social · 26/05/2026
Bonus image from our initial writing retreat in Guggisberg from September 2024!
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Oliver Meacock @olimeacock.bsky.social · 25/05/2026
And also @mariacoliveira.bsky.social for the beautiful illustrations!
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Oliver Meacock @olimeacock.bsky.social · 25/05/2026
Thanks to @annasophieweiss.bsky.social and Margaret Vogel for getting this over the finish line together, the NCCR microbiomes for 💰 and administrative support, Tom Miller for corralling our microbiological naivety and all the other members of team #micro-macro!
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Oliver Meacock @olimeacock.bsky.social · 25/05/2026
While this was principally a project by ECRs for ECRs, we hope that it proves a useful resource for anyone interested in using ecological principles for investigating and managing microbiota
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Oliver Meacock @olimeacock.bsky.social · 25/05/2026
One of our key messages is that we shouldn't lose sight of the history of the field among the growing forest of data. Ecologists have been debating these ideas for decades or even centuries, and as self-confessed dabblers in ecology we found that we risked restarting these debates from square one
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Oliver Meacock @olimeacock.bsky.social · 25/05/2026
Delighted to see this out in its final form! doi.org/10.1093/isme... We established a discussion group focussed on the history of community ecology and how it informs our understanding of microbiota. This review distils those discussions to provide a guide for microbiologists entering the field
doi.org
A microbiologist’s field guide to community ecology
Abstract. Many microbiological outcomes are shaped by the determinants of community composition, including the factors that allow pathogens to invade healt
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Oliver Meacock @olimeacock.bsky.social · 08/05/2026
Last few days to submit an abstract for this - a wonderful opportunity to get some experience in the art of the chalk talk!
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Oliver Meacock @olimeacock.bsky.social · 18/03/2026
This was great fun in 2024! Really worthwhile supporting this sustainable conference format, particularly if you enjoy dipping into talks at all hours of the day Hopefully I will see some GMT +00:00 inhabitants in Manchester and the rest of you on the big screen!
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Reposted by Oliver Meacock
MEEhubs @meehubs.bsky.social · 18/03/2026
MEEHubs2026 registration and abstract submission is now online! 🚨🦠✨ Join us Aug 3 - 5, 2026 at one of the 7 hubs or online. We are incredibly excited about our lineup of speakers, and hope that you submit an abstract to contribute too! More information and registration links at: meehubs.org
meehubs.org
Home
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Reposted by Oliver Meacock
Alejandro Fábregas-Tejeda @alejandrofabregastejeda.com · 09/03/2026
What a joy to finally share the cover of The Organism–Environment Pairing (@mitpress.bsky.social)! The 📗 will be out on May 12 📆! I look forward to the conversations it sparks among scientists, philosophers & historians! mitpress.mit.edu/978026205282... #evosky #histsci #philsci #philsky #booksky 🌱🐋
Book cover with a green gradient background for "The Organism–Environment Pairing: A Historical and Philosophical Reappraisal" by Alejandro Fábregas-Tejeda (MIT Press, 2026). The book series label “The Vienna Series in Theoretical Biology” appears at the top. The title is set in large, bold lettering using three colors: white (“The” and “Pairing”), warm yellow (“Organism–”), and bright green (“Environment”). The subtitle appears below in smaller white text, and the author’s name is printed at the bottom. In the lower right, a monarch butterfly (Danaus plexippus) rests on clusters of pink milkweed flowers. Behind it, a large pale-green butterfly silhouette fills the background; its outline follows the shape of a red lacewing butterfly (Cethosia biblis). The layered butterflies visually echo the book’s central idea of an organism–environment pairing.
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Life Sciences Switzerland (LS2) @lifesciswitzerland.bsky.social · 27/02/2026
Register for Theory across Biology 2026: 12 June, Bern. One-day meeting on mathematical & theoretical approaches in biology with chalk talks and flip-chart sessions. Ideal for theorists, modelers, and interdisciplinary biologists. Abstracts by: 10 May 2026 Register by: 24 May 2026: buff.ly/svAZ8NF
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Oliver Meacock @olimeacock.bsky.social · 19/01/2026
Last few days before the deadline! Please get in touch if you (or anyone you know) are interested
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Oliver Meacock @olimeacock.bsky.social · 07/01/2026
I'm looking for students with a background in any of a broad range of subjects, including microbiology, theoretical ecology, computational biology and dynamical systems. If that sounds intriguing get in touch and we can discuss how to tailor the general topic to your specific interests!
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Oliver Meacock @olimeacock.bsky.social · 07/01/2026
Do you have an interest in quantitative microbiology and interdisciplinary research? I'm recruiting a UK PhD student to develop high-throughput ecological screens to help us understand how chemical inputs impact microbial ecosystems: www.findaphd.com/phds/project...
findaphd.com
Identifying how chemicals shape microbial diversity through high-throughput ecological screens at University of Sheffield on FindAPhD.com
PhD Project - Identifying how chemicals shape microbial diversity through high-throughput ecological screens at University of Sheffield, listed on FindAPhD.com
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Oliver Meacock @olimeacock.bsky.social · 07/01/2026
This is from Woodward and Diament (1991, www.jstor.org/stable/pdf/2...) - is it what you were looking for? There's also another version of the same thing here: sites.lifesci.ucla.edu/eeb-kraft/wp...
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Oliver Meacock @olimeacock.bsky.social · 08/12/2025
One week left to submit an abstract for this! Sun, sea and spectacular speakers - what more can you ask for from a conference? If you are interested but are being put off by travel costs or fees, get in touch - we will be offering bursaries and fee discounts for selected participants
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Rob Fagan @robfagan.bsky.social · 31/10/2025
🚨 Fully funded PhD studentships 🚨 We have three fully funded PhD studentships available for Oct 26 start. Funded by the MRC DiMeN programme & the BBSRC Yorkshire Biosciences DTP. Details below as they are advertised. Contact me here or via email for more details or to discuss an application
sites.google.com
Clostridial Cell Biology Group
We are the Clostridial Cell Biology Group at the University of Sheffield. We study all aspects of cell biology, including the architecture and biogenesis of surface structures on both vegetative cells...
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Oliver Meacock @olimeacock.bsky.social · 31/10/2025
Aww thanks Snorre
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 30/10/2025
🔊 Applications for the tenure-track illuminate global challenge fellowships at Queen’s are now open! Comes with 5 years protected research time, a PhD studentship, & 60k start-up. I had one of these before getting my FLF, happy to chat to anyone interested! www.qub.ac.uk/Research/fel...
qub.ac.uk
Our Illuminate Global Challenges Fellowships | Research | Queen's University Belfast
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Oliver Meacock @olimeacock.bsky.social · 30/10/2025
I am excited to announce two PhD opportunities! Come and join our interdisciplinary team in Sheffield, UK. - Destroying forever chemicals with microbes and cold plasma: tinyurl.com/mth8ymx5 - Learning how motile bacteria make decisions: tinyurl.com/2hmc9a8u UK and overseas students welcome to apply!
tinyurl.com
ECOSOLUTIONS DFA - Harnessing microbes and cold plasma to concentrate and destroy ‘forever chemicals’ in food associated ecosystems at University of Sheffield on FindAPhD.com
PhD Project - ECOSOLUTIONS DFA - Harnessing microbes and cold plasma to concentrate and destroy ‘forever chemicals’ in food associated ecosystems at University of Sheffield, listed on Find...
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Oliver Meacock @olimeacock.bsky.social · 17/10/2025
As well as providing a networking space for the next generation of biological physicists, we will enjoy talks on: • Transport across scales • Data-driven modelling • Active matter • AI and machine learning • Cells and tissues • Animal behaviour • Ecology and evolution • Non-equilibrium systems
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Oliver Meacock @olimeacock.bsky.social · 17/10/2025
I'm delighted to announce that the Interdisciplinary Challenges (IntCha) meeting is returning in April 2026! Abstract submission is now open. We encourage young scientists working at the interface between biology and physics to join us at the IESC in Corsica. Website here: intcha26.sciencesconf.org
The Institut d'Études Scientifiques (IESC), on the coast of Corsica.
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Tung Le @tunglejic.bsky.social · 03/10/2025
Independent research fellowships leading to tenured positions at the John Innes Centre. Repost = nice. Thank you very much!!!
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MEEhubs @meehubs.bsky.social · 07/10/2025
We’re back! ✨ The next #MeeHubs26 is coming with 7 hubs across the globe and incredible lineups at each. Can’t wait to share more soon! meehubs.org
meehubs.org
Home
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Reposted by Oliver Meacock
Snorre Sulheim @sulheim.bsky.social · 20/08/2025
Excited to share the first results from my postdoc at @dmf-unil.bsky.social with @saramitri.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
Microbes release lower-value metabolites at higher rates
Microbes release a wide range of metabolites into their environment, yet the reasons for this release and the factors that influence release rates are not well understood. Here, using a combination of...
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Susan Schlimpert @s-lab.bsky.social · 10/07/2025
New Independent Fellowship position in Microbiology to launch your lab in our department @johninnescentre.bsky.social (UK). We are conducting a broad search in the area of plant-associated microbial interactions. Message me if you have any questions. Apply here: www.jic.ac.uk/vacancies/in...
jic.ac.uk
Independent Fellowship in Plant-Associated Microbial Interactions | John Innes Centre
An exciting opportunity for an Independent Fellowship in Plant-Associated Microbial Interactions has arisen at the John Innes Centre. To read the full job description for this role…
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