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Neuroscience Information Framework

@neuinfo.org
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Neuroscience Information Framework @neuinfo.org · 27/08/2025
Kicking off the Community for Rigor’s C4R25 Conference – the only conference dedicated to scientific rigor! 🎉 📍 UPenn Campus 📅 Monday, Sept 8 🔗 Register today: c4r.io/conference
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Neuroscience Information Framework @neuinfo.org · 04/07/2025
📢 #Funding Alert Coming Soon! #NIDDK plans to publish a NOFO on #DigitalHealth tech for Type 2 #Diabetes care (R01, clinical trial required). From CGMs to virtual coaching, this is your chance to shape the future of diabetes management. Start preparing now! 🔗 dknet.org/about/dknetn...
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Neuroscience Information Framework @neuinfo.org · 22/06/2025
Join NIDDK-CR for a demo on NIDDK-CR Data Challenge Management Platform — a secure, cloud-based solution for managing scientific competitions that power innovation in diabetes research. 📅 Saturday, June 21 ⏰ 2-2:30 PM 📍NIDDK Data Science Corner at Exhibit Hall. #NIH #NIDDK
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Neuroscience Information Framework @neuinfo.org · 22/05/2024
🚨 Last chance to join the 2024 NEURON Summer Course at Brown University! 🧠 Only a few seats left. Don’t miss this opportunity to learn computational modeling of neurons and networks. Deadline: June 3, 2024. More information:#Neuroscience neuron.yale.edu/neuron/node/180
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Neuroscience Information Framework @neuinfo.org · 29/03/2024
📢 Exciting news! #RRID (Research Resource Identifier) may soon be part of DataCite Metadata Schema! 📝 Have thoughts? Your feedback matters! Check out the Request for Comments (RFC) and share your insights by May 6, 2024! datacite.org/blog/metadata-…
datacite.org
Requesting Your Feedback on DataCite Metadata Schema Changes - DataCite
The DataCite Metadata Working Group has been working on the next batch of Metadata Schema changes—and we need your feedback! Today, we are sharing a new Request for Comments (RFC) with several proposed changes to the DataCite Metadata Schema. Since Schema 4.5 was finalized, we have been working on numerous ideas put forward by the DataCite community—some of which are reflected in this RFC. The set of changes we are sharing here is not yet a complete schema version; rather, this RFC contains an assortment of changes that may be released in different versions—for example, some changes may be released in Version 4.6, while others may be scheduled for later versions. The implementation details and release timing of specific changes will depend on complexity, backward compatibility, and the DataCite development roadmap.
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Neuroscience Information Framework @neuinfo.org · 10/01/2024
🌐 Explore Dr. Maryann Martone's @memartone latest article on the evolution of neuroscience #datasharing, highlighting the progress towards FAIR principles. Discover the future of #openscience in neuroscience:#FAIRdata frontiersin.org/articles/10.33…
frontiersin.org
Frontiers | The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR
Neuroscience has made significant strides over the past decade in moving from a largely closed science characterized by anemic data sharing, to a largely ope...
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Neuroscience Information Framework @neuinfo.org · 15/11/2023
👏 Exciting News! Dr. Anita Bandrowski @Anitabandrowski, RRID team lead, co-authored "Establishing an early indicator for data sharing and reuse," is now published! 📚 Check out the insightful article and learn about tracking #datasharing patterns: onlinelibrary.wiley.com/doi/10.1002/le…
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Neuroscience Information Framework @neuinfo.org · 06/11/2023
📢 Explore further the importance of tidy data! Check out this insightful blog by @memartone on #OpenData Commons for Traumatic Brain Injury (ODC-TBI). Don't miss it! 📚🔍 Read here:#DataManagement #TidyData #DataStandards #TBI odc-tbi.org/about/odc_tbi_…
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Neuroscience Information Framework @neuinfo.org · 07/07/2023
Nice video on PRECISE-TBI tools that enable you to get the most out of your scientific paper. These tools help scientists conducting experimental or pre-clincal traumatic brain injury research make data more FAIR, rigorous, reproducible, and transparent. youtu.be/JdStDfI1E6w
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Neuroscience Information Framework @neuinfo.org · 31/05/2023
📢 Only a few seats left for the 2023 NEURON Summer Course! Sign up by Friday, June 2 to join the summer course at Wright State University's Dayton campus from June 11-16 to dive into computational modeling of neurons and networks! More info: neuron.yale.edu/phpBB/viewtopi…
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Neuroscience Information Framework @neuinfo.org · 23/05/2023
The lack of #reproducibility in #scientificresearch causes delays and wasteful spending in many labs. @sciscore tackles this issue by verifying reporting #standards, reducing incompleteness, and boosting experimental reproducibility. #RRID #OpenScience youtube.com/watch?v=rprRxe…
youtube.com
How can SciScore improve reproducibility in your research?
The inability for scientists to reproduce each other’s work has significant effects on preclinical studies in both delays and expenditure. SciScore is a methods review tool designed to improve reporting standards, to minimize unnecessary delays due to incompleteness and maximise robustness, so that experiments can be reproduced optimally. ━━━━━━━━━━━━━━━━━━━━ Social Media ──────────────────────────── https://www.linkedin.com/showcase/sciscore/ https://twitter.com/sciscore https://twitter.com/Anitabandrowski https://twitter.com/mathein ━━━━━━━━━━━━━━━━━━━━ Science Animated ──────────────────────────── http://www.sciani.com/ https://twitter.com/Sci_Ani https://www.facebook.com/scianimation/ https://sciani.com/terms-conditions/ ━━━━━━━━━━━━━━━━━━━━ #antibodies #research #softwaretools ━━━━━━━━━━━━━━━━━━━━
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Neuroscience Information Framework @neuinfo.org · 28/04/2023
📢 Are you a LitCoin enthusiast or a data science lover? Apply for an opportunity to work on one of several projects supported by the NIH’s Office of Data Science Strategy. Apply by May 15th, 2023. #LitCoin #DataScience #NLP datascience.nih.gov/data-scholars-…
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Neuroscience Information Framework @neuinfo.org · 17/04/2023
Get ready to dive into the exciting world of computational modeling of neurons and networks with NEURON! Join the 2023 NEURON Summer Course from June 11-16 at Dayton Campus of Wright State University. Register deadline: June 2. Limited space available! neuron.yale.edu/phpBB/viewtopi…
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Neuroscience Information Framework @neuinfo.org · 08/03/2023
Have you ever wondered whether a preprint has been published already? A new tool, PrePrintMatch, was created by Peter Eckmann and has been used to visualize global inequities in publishing. ow.ly/rwpf50NcuZz ow.ly/ICEV50NcuZB
ow.ly
PreprintMatch: A tool for preprint to publication detection shows global inequities in scientific publication
Preprints, versions of scientific manuscripts that precede peer review, are growing in popularity. They offer an opportunity to democratize and accelerate research, as they have no publication costs or a lengthy peer review process. Preprints are often later published in peer-reviewed venues, but these publications and the original preprints are frequently not linked in any way. To this end, we developed a tool, PreprintMatch, to find matches between preprints and their corresponding published papers, if they exist. This tool outperforms existing techniques to match preprints and papers, both on matching performance and speed. PreprintMatch was applied to search for matches between preprints (from bioRxiv and medRxiv), and PubMed. The preliminary nature of preprints offers a unique perspective into scientific projects at a relatively early stage, and with better matching between preprint and paper, we explored questions related to research inequity. We found that preprints from low income countries are published as peer-reviewed papers at a lower rate than high income countries (39.6% and 61.1%, respectively), and our data is consistent with previous work that cite a lack of resources, lack of stability, and policy choices to explain this discrepancy. Preprints from low income countries were also found to be published quicker (178 vs 203 days) and with less title, abstract, and author similarity to the published version compared to high income countries. Low income countries add more authors from the preprint to the published version than high income countries (0.42 authors vs 0.32, respectively), a practice that is significantly more frequent in China compared to similar countries. Finally, we find that some publishers publish work with authors from lower income countries more frequently than others.
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Neuroscience Information Framework @neuinfo.org · 17/11/2022
the source for all #antibody #RRID, now published! 97% of human proteins have at least one antibody associated Thank you to journals, antibody companies and authors for making this work possible. lnkd.in/gnVCnjzp AntibodyRegistry.org
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Neuroscience Information Framework @neuinfo.org · 13/11/2022
Come listen to Maryann Martone (@neuinfo @INCForg @sparc_science @odc_sci ) talk about ‘Open Neuroscience and the Meaning of FAIR’ (#SfN22 #SfN2022 David Kopf Neurotics lecture) Monday, November 14, 10:30–11:30 a.m @SfNTweets
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Neuroscience Information Framework @neuinfo.org · 13/11/2022
#SfN22 #SfN2022 Stop by the NIF booth to learn how to meet NIH’s new data sharing mandate and pickup your brain hat #brainhat.
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Neuroscience Information Framework @neuinfo.org · 28/09/2022
Feeling used .... to disambiguate software tools discussed in the scientific literature Thanks @ReaderMeter & @cziscience et al for your amazing work! CZ Software Mentions Dataset—a dataset of 67M software mentions mined from biomedical literature ow.ly/ITu650KWlex
ow.ly
New data reveals the hidden impact of open source in science
Understanding software used by scientists by mining the biomedical literature
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Neuroscience Information Framework @neuinfo.org · 17/08/2022
Help @INCForg chart barriers to sharing or reusing neuroscience data by taking this brief anonymous survey. Please RT & share with your networks! forms.gle/Gnq8Eb7eMFg1Jx…
forms.gle
INCF Community survey on data sharing
This brief 2-minute survey was created by the INCF Infrastructure Committee and is intended for neuroscience researchers worldwide. Your response will help INCF develop strategies and activities to support the global neuroscience community. *No personally-identifying information or email addresses will be collected.* See https://www.incf.org/about-incf for more information.
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Neuroscience Information Framework @neuinfo.org · 17/08/2022
Thanks to NSF for funding FAIR open science infrastructure. It looks like Neuroscience will be teaming up with Geoscience to improve how we all communicate about core facilities and instruments using persistent unique identifiers. #RRID #OpenScience arl.org/news/arl-appla…
arl.org
ARL Applauds NSF Open Science Investment — Association of Research Libraries
The Association of Research Libraries (ARL) commends the ongoing commitment of the US National Science Foundation (NSF) to open science. NSF today announced awards for 10 new projects focused on...
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Neuroscience Information Framework @neuinfo.org · 07/07/2022
Learn about a neuroimaging research center’s transition to open and reproducible science@ReproNim @keith_a_bush #OpenScience #ReproducibleScience osf.io/fe74t/
osf.io
OSF
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Neuroscience Information Framework @neuinfo.org · 15/06/2022
500K #RRID s are in the wild, wonder what we can do with these well described reagents and resources? doi.org/10.1093/gigasc…
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Neuroscience Information Framework @neuinfo.org · 30/05/2022
We are delighted to announce that #AccessMicro has launched as an innovative open research platform and is now open for submissions. Find out how the platform offers a new service to our community.#RRID Read full blog ow.ly/WNB030skVzJ microb.io/3z6FmX1
microb.io
Microbiology Society launches an innovative open research platform
The Microbiology Society is delighted to announce that our sound science journal, Access Microbiology, has been re-launched as an innovative open research platform and is now open for submissions. It is free for authors to submit and publish on the platform during the first year of launch, so we encourage early submission to take advantage of this.
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Neuroscience Information Framework @neuinfo.org · 19/05/2022
May 17, 2022 release ofVer. 8.2, adding over 26,000 tracings from 151 new datasets. This major update brings the database total to 173,821 digital reconstructions of neuronal and glial morphology. ow.ly/3PLu30sk0RS NeuroMorpho.Org
neuromorpho.org
NeuroMorpho.Org - a centrally curated inventory of digitally reconstructed neurons and glia
New agile release of https://t.co/xq9slALVmX available, v8.6.65, including 91 novel reconstructions in the DeKock archive. https://t.co/MI6OA2Xfox pic.twitter.com/Bp2t7G5JEz
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Neuroscience Information Framework @neuinfo.org · 22/04/2022
Wow, the #BICCN group has published 97 protocols on @protocolsIO and they have been accessed over 43,000 times, downloaded more than 15,000 times!!! Check out all of the great protocols from BICCN @AllenInstitute protocols.io/workspaces/bic…
protocols.io
BICCN / BICAN - research workspace on protocols.io
Brain, Neuron
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Neuroscience Information Framework @neuinfo.org · 20/04/2022
The 2022 cohort for DATA Scholars will begin accepting applications soon, but you can get a sneak peek at the opportunities today! Ten scholars will have the opportunity to make a mark on the future of biomedical research and our nation's health. datascience.nih.gov/data-scholars-…
datascience.nih.gov
Data and Technology Advancement (DATA) National Service Scholar Program: Data Scientists Advancing Biomedical Research 2022 | Data Science at NIH
OverviewProgram DetailsNIH Prioritized Projects for DATA ScholarsApplication InformationEligibilityCompensation and BenefitsProgram Contacts
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Neuroscience Information Framework @neuinfo.org · 14/04/2022
Interested in doing some open source development for a great cause this summer? Apply to SPARC's Google Summer of Code 2022 project! Work with SPARC DRC mentors and also receive a stipend from Google! Applications are being accepted until 4/19. sparc.science/news-and-event…
sparc.science
Google Summer of Code (GSoC) SPARC project: Applications Due on April 19
Applications are being accepted to work with SPARC Data and Resource Scientists as part of Google's Summer of Code program. Contribute tangibly to the creation of new SPARC Portal functionality.
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Neuroscience Information Framework @neuinfo.org · 10/04/2022
The global preclinical data forum is offering a negative data prize! This is is an opportunity for someone to get prize money and recognition for data transparency. preclinicaldataforum.org/negative-prize/
preclinicaldataforum.org
Best Negative Data Prize in Preclinical Neuroscience - Global Preclinical Data Forum
Negative findings may contribute to invaluable scientific insights, but this data is currently lost to science. The Best Negative Prize was established as an incentive for preclinical researchers to publish “negative data” results to ensure neuroscience studies properly advance knowledge.
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Neuroscience Information Framework @neuinfo.org · 08/04/2022
A brain calendar? Yes please! 2022 BRAIN Initiative Show Us Your BRAINs! Photo and Video Contest is Now Open The BRAIN Initiative’s popular photo and video contest is back, and we are now accepting submissions through April 20, 2022. braininitiative.nih.gov/news-events/sh…
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Neuroscience Information Framework @neuinfo.org · 06/04/2022
Neuromatch Academy will be offering two courses in July this year: NMA-Computational Neuroscience, and NMA-Deep Learning, Registration is open until April 20, 2022. For more information, see neuron.yale.edu/phpBB/viewtopi…
neuron.yale.edu
Neuromatch Academy - www.neuron.yale.edu
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Neuroscience Information Framework @neuinfo.org · 29/03/2022
Attend the EBRAINS Brain Simulation School 2022 to learn about the many powerful computational neuroscience tools available. This course will be held May 30 through June 3 in Italy. Registration is limited, and the deadline is April 30, so act soon! ow.ly/rklJ30sfV7m
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Neuroscience Information Framework @neuinfo.org · 22/03/2022
"Is the Scientific Literature Better Today Than It Was 10 Years Ago? A Journey from RRIDs to the Rigor and Transparency Index". The lecture will be moderated by Prof. Ulrich Dirnagl (BIH QUEST Center for Responsible Research). Friday, 25 March 2022 bihealth.org/en/notices/bih…
bihealth.org
BIH Lecture "Is the scientific literature better today than it was 10 years ago?" by Anita Bandrowski - News - BIH at Charité
A Journey from RRIDs to the Rigor and Transparency Index.
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Neuroscience Information Framework @neuinfo.org · 21/03/2022
New INCF endorsement standard: MBF file format!!! We are pleased to inform you that on January 25 2022, the INCF Standards and Best Practices (SBP) committee endorsed the MBF file format as a standard, with the standard number INCFSN-22-01. incf.org/mbf-file-forma…
incf.org
MBF File Format v 4.0 | INCF
The neuromorphological file format balances structure with flexibility by storing each modeled object as a unique data element and providing mechanisms for grouping any number and type of data elements. File-level metadata is retained to provide detail on the origin of the sample, ensuring that the provenance of derivative data is tracked and that important source information is not separated from the corresponding data.
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Neuroscience Information Framework @neuinfo.org · 13/01/2022
Congratulations to the @INCF Active Segmentation for ImageJ group for publishing on "The Active Segmentation Platform for Microscopic Image Classification and SegmentationThis is a nice output from a long running and engaged group. mdpi.com/2076-3425/11/1…
mdpi.com
The Active Segmentation Platform for Microscopic Image Classification and Segmentation
Image segmentation still represents an active area of research since no universal solution can be identified. Traditional image segmentation algorithms are problem-specific and limited in scope. On the other hand, machine learning offers an alternative paradigm where predefined features are combined into different classifiers, providing pixel-level classification and segmentation. However, machine learning only can not address the question as to which features are appropriate for a certain classification problem. The article presents an automated image segmentation and classification platform, called Active Segmentation, which is based on ImageJ. The platform integrates expert domain knowledge, providing partial ground truth, with geometrical feature extraction based on multi-scale signal processing combined with machine learning. The approach in image segmentation is exemplified on the ISBI 2012 image segmentation challenge data set. As a second application we demonstrate whole image classification functionality based on the same principles. The approach is exemplified using the HeLa and HEp-2 data sets. Obtained results indicate that feature space enrichment properly balanced with feature selection functionality can achieve performance comparable to deep learning approaches. In summary, differential geometry can substantially improve the outcome of machine learning since it can enrich the underlying feature space with new geometrical invariant objects.
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Neuroscience Information Framework @neuinfo.org · 07/01/2022
Our colleagues at Terra have compute resources available for #BICCN and other computational users. @Nature did a nice write-up about this great resource! Check it out: doi.org/10.1038/d41586…
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Neuroscience Information Framework @neuinfo.org · 03/01/2022
Great read about the "International data governance for neuroscience sciencedirect.com/science/articl…
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Neuroscience Information Framework @neuinfo.org · 20/12/2021
The Brain Image Library, or BIL, wants you to know how to submit your image data. Curious? Workshop Sign-up Link - forms.gle/6ruzT54shZ83BC…
forms.gle
Brain Image Library Workshop
July 27-28th 2022
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Neuroscience Information Framework @neuinfo.org · 14/12/2021
Apply soon for a 2 year fellowship (postdoc). This fellow will receive $100,000 per year to study neuropsychiatric phenotypes in Phelan-McDermid syndrome. Both U.S. and international applicants are eligible; deadline is 01-14-22 pmsf.org/for-researcher…
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Neuroscience Information Framework @neuinfo.org · 13/12/2021
Mark your calendars: SCKAN: The SPARC Connectivity Knowledge Base of Autonomic Circuitry Thursday, Dec. 16, 2021, 3 to 4 PM EST Registration link: eventbrite.com/e/sckan-the-sp…
eventbrite.com
SCKAN: The SPARC Connectivity Knowledge Base of Autonomic Circuitry
Researchers will learn about SCKAN, why it was constructed, how it is used and where it is going from here.
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Neuroscience Information Framework @neuinfo.org · 07/12/2021
on a lighter note
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Neuroscience Information Framework @neuinfo.org · 06/12/2021
Interesting article about reproducibility, journal guidelines are not a quick fix to reproducibility woes! Also a great example of an article that reuses the #RRID and @sciscore data to reach more nuanced conclusions. onlinelibrary.wiley.com/doi/abs/10.100…
onlinelibrary.wiley.com
Misidentified biomedical resources: Journal guidelines are not a quick fix
What's new? Inadequately identified research materials and irreproducibility of results are significant issues in biomedical research. In response, some biomedical journals have added guidelines to h...
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Neuroscience Information Framework @neuinfo.org · 01/11/2021
Fun bit of news @SparcScience , something positive came from the pandemic, this prof had more time to read and now we appear to have a universal principle of physiology. neurosciencenews.com/adaptation-res…
neurosciencenews.com
A Universal Law of Physiology Emerges From a Professor’s Research - Neuroscience News
A new study presents the first quantitative comparison of adaptation response.
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Neuroscience Information Framework @neuinfo.org · 28/10/2021
iBRAIN (in Manhattan) is looking for a neuroscience postdoc. If interested, see the post here indeed.com/job/postdoctor…
indeed.com
Postdoctoral Associate - Neuroscience/Psychology - New York, NY 10128 - Indeed.com
International Institute for the Brain (iBrain)
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Neuroscience Information Framework @neuinfo.org · 22/10/2021
Revealing the Mammalian Motor Cortex: Brain Initiative Cell Census Network (BICCN) Flagship Release Webinar! Sign up now Wednesday, October 27, 2021; 10:00-11:30am Pacific Time alleninstitute.org/what-we-do/bra…
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Neuroscience Information Framework @neuinfo.org · 18/10/2021
Congratulations to Dr. Burak Ozyurt (FDI Lab @UCSD), who placed 1st in the 9th BioASQ Challenge (Task 9b). @BioASQ Learn more about this at the FDI Lab Blog: scicrunch.org/scicrunch/abou…
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Neuroscience Information Framework @neuinfo.org · 15/10/2021
Feeling not too dandy about sharing your electrophysiology data? Consider coming to an online hands-on user workshop on using the DANDI archive for your research on Nov 1, 2021. For those interested please register using the link provided on this page. dandiarchive.org/2021/10/13/dan…
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Neuroscience Information Framework @neuinfo.org · 11/10/2021
Postdoctoral positions are available at the University of Texas at Austin. NSF and NIH funded Projects include Integrating the Brain Imaging Data Structure,with EEG, MEG and MRI data. email: pestilli@utexas.edu OpenNeuro.org brainlife.io
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Neuroscience Information Framework @neuinfo.org · 08/10/2021
Congratulations to @Cellosaurus 's Prof. Amos Bairoch, the recipient of the 2021 exceptional contribution to biocuration award! biocuration.org/amos-bairoch-r…
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Neuroscience Information Framework @neuinfo.org · 06/10/2021
BICCN Cell Census Nature issue is out! Check out all that this consortium has produced to date: nature.com/collections/ci…
nature.com
Brain Initiative Cell Census Network
Four years ago, the NIH’s Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative Cell Census Network (BICCN) was launched, aiming to ...
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Neuroscience Information Framework @neuinfo.org · 05/10/2021
Thrilling #RRID news!!! The Rat Genome Database now contains a Citation ID for all of their strains. Thank you so much @ratgenome for making this happen. It should help authors who would like to cite their strains but have been a little confused about how rgd.mcw.edu/rgdweb/report/…
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