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MyST Markdown

@mystmd.org
1.2K followers 3.8K following 81 posts

Markdown with superpowers for writing scientific 👨‍🔬 and technical 📈papers. #OpenSource & maintained by Project #Jupyter.

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MyST Markdown @mystmd.org · 27/06/2026
🥰🚀
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openRxiv @openrxiv.bsky.social · 11/06/2026
We just launched a new reading experience with Curvenote in openRxiv Labs 🎉 First experiment from openRxiv Labs x @curvenote.com 👉 reader.openrxivlabs.org More openrxiv.org/news/labs-re...
reader.openrxivlabs.org
Recent articles · openRxiv Labs: Curvenote Reader
Browse recent bioRxiv preprints available on the openRxiv Labs: Curvenote Reader.
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Curvenote® @curvenote.com · 21/05/2026
🚀 Today we’re launching Curvenote Reader Curvenote Reader transforms existing research into connected, web-native reading experiences layered onto the systems repositories and publishers already use. No rebuilds. No workflow disruption. → curvenote.com/products/rea...
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Steve Purves @opensci.dev · 17/03/2026
After some upstreaming work by @curvenote.com and further work by the @mystmd.org core team, `anywidget` directive is now natively supported in `mystmd` and Jupyter Book 🎉 jupyterbook.org/blog/posts/2...
jupyterbook.org
The MyST AnyWidget Directive - Jupyter Book: Blog
Updates from the Jupyter Book subproject.
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Steve Purves @opensci.dev · 21/02/2026
Made some #bluesky profile cards for @mystmd.org via the widget interface (widget doesn't feel like right interface, but a handy starting point). Just needed a fetch call to api.bsky.app 🤩 wrote more about it here. more #bsky / #atproto experiments coming. opensci.dev/articles/blu...
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MyST Markdown @mystmd.org · 16/02/2026
New release 🚀 We just shipped several UX and UI bugfixes in the Jupyter Book and MyST stack. - mystmd v1.8.1 jupyterbook.org/releases/mys... - myst-theme v1.1.2 jupyterbook.org/releases/mys... We will get a jupyter-book release out to bring these in as soon as we fix our release infra 😅
jupyterbook.org
MyST Theme Releases - Community Guide
This may be due to an incorrect BASE_URL configuration. See the MyST Documentation for reference.
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MyST Markdown @mystmd.org · 06/02/2026
💚🚀
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Steve Purves @opensci.dev · 06/02/2026
Adding an `anywidget` style/based directive & renderer into the core @mystmd.org stack is a big win for custom interactivity and extensibility. My contribution this week: to round off the first cut implementation - based on what've had in prod at @curvenote.com. opensci.dev/articles/ups...
opensci.dev
Upstreaming `anywidget` into the MyST Markdown core - opensci.dev
A techbit on upstreaming the anywidget directive to the MyST Markdown core stack, enabling first-class support for embedding JS widgets in MyST Markdown documents.
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MyST Markdown @mystmd.org · 29/01/2026
🛳️ New release of myst-theme ! This is a patch release to fix a bunch of UI/UX bugs that we uncovered after the last minor release. Thanks to everybody for testing and quick feedback! github.com/jupyter-book...
github.com
Release myst-to-react@1.1.1 · jupyter-book/myst-theme
This brings in several UI and UX improvements that were noticed after the last minor release! Bugs fixed Hover preview cards to documents with metadata now work! #772 (@choldgraf, @bsipocz, @rowan...
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MyST Markdown @mystmd.org · 27/01/2026
This release was created by a community of maintainers, thanks to the Jupyter Book community for all of their support of the project! Check out the release notes above for a list of the people that contributed to each release. 🎉
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MyST Markdown @mystmd.org · 27/01/2026
It also standardizes and improves the behavior of links so that interactive, external, and internal links now have distinct and consistent styles so that your readers know what to expect.
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MyST Markdown @mystmd.org · 27/01/2026
This release brings more control over *concurrent execution* of notebook content as part of this build process. This allows you to define the number of simultaneous executions when your book builds to ensure they occur more sequentially, or reduce bugs if notebooks spawn their own parallel processes
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MyST Markdown @mystmd.org · 27/01/2026
We're proud to announce a new release of the Jupyter Book stack! This brings in a number of fixes and UI improvements! Check out release notes for each here: mystmd 1.8: github.com/jupyter-book... myst-theme 1.1: github.com/jupyter-book... jupyter-book 2.1.1: github.com/jupyter-book...
github.com
Release mystmd@1.8.0 · jupyter-book/mystmd
This brings in new functionality for execution concurrency, allowing you to control how many notebooks are executed in parallel during build in case you have notebooks that depend on one another or...
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Steve Purves @opensci.dev · 20/01/2026
Running live previews with the @mystmd.org CLI on a JupyterHub has been a challenge so far - the available theme servers are not setup well to support this. We've made progress on a solution that's almost ready to share, meantime this explains the problems it solves: opensci.dev/articles/jup...
opensci.dev
JupyterHub + MyST: A Proxy Problem - opensci.dev
A post exploring the proxy problem with JupyterHub and MyST Markdown's live previews.
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MyST Markdown @mystmd.org · 14/01/2026
The page-last-updated plugin is a MyST plugin to make it clear to readers when your content was updated on each page. Here's a little post about how it works and where to learn about more plugins like it! blog.jupyterbook.org/posts/2026/p...
blog.jupyterbook.org
Introducing the `page-last-updated` plugin - Jupyter Book: Blog
Updates from the Jupyter Book subproject.
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Steve Purves @opensci.dev · 17/12/2025
I (and we @mystmd.org) have been working on releasing new version of the MyST Markdown AST. A foundational change to the representation of Jupyter outputs that sets up a lot of future possibilities - notes and thoughts are here: opensci.dev/articles/on-...
opensci.dev
On the MyST Markdown V3 AST - opensci.dev
A post exploring the new MyST Markdown V3 AST and the changes it brings to the MyST Markdown stack.
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MyST Markdown @mystmd.org · 17/12/2025
This lays the foundation for building more enriched and precise workflows around notebook outputs. We now treat *each output* from a cell independently, laying a foundation to enable things like generating labels with notebook cells. Here's a PR to follow along: github.com/jupyter-book...
github.com
✍️ Parse Markdown and LaTeX outputs into AST by agoose77 · Pull Request #1961 · jupyter-book/mystmd
This PR closes #2114 by parsing Markdown and LaTeX outputs into the MyST AST. NotePart of initiative #1026 We skip the following transforms: importMdastFromJson includeFilesTransform rawDirective...
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MyST Markdown @mystmd.org · 17/12/2025
There's an ongoing community discussion about this change, and we invite feedback from others in this MyST Enhancement Proposal discussion: github.com/jupyter-book...
github.com
🪐 Per-Output AST Representation for Code Cell Outputs by rowanc1 · Pull Request #32 · jupyter-book/myst-enhancement-proposals
Extend the MyST AST to represent individual code cell outputs as separate AST nodes, enabling output content to participate in MyST builds (e.g., generate and consume reference labels). Authors @...
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MyST Markdown @mystmd.org · 17/12/2025
The Jupyter Book team has been working hard on a big foundational improvement to how notebook outputs are represented in MyST documents. Steve writes about this change and what it means in this post: blog.jupyterbook.org/posts/2025-1...
blog.jupyterbook.org
Jupyter Book V3 AST: Better Output Handling and Future Possibilities - Jupyter Book: Blog
Updates from the Jupyter Book subproject.
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Steve Purves @opensci.dev · 02/12/2025
We've just moved our `any-widget` based directives and renders for @mystmd.org into a public repo on @curvenote.com . After quite a while tinkering these are nicely supporting interactive visualizations - more work to fully implement the full `any-widget` interface coming github.com/curvenote/cu...
github.com
curvenote/packages/any-widget at main · curvenote/curvenote
Create, edit, share, and publish scientific and technical documents. - curvenote/curvenote
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MyST Markdown @mystmd.org · 21/11/2025
The Jupyter Book gallery is back! Now with the MyST Engine under the hood! Thanks to @FreekPols for contributing it. jupyterbook.org/latest/galle...
jupyterbook.org
🖼️ Gallery of Jupyter Books - Jupyter Book
Jupyter Book technology has been applied across a wide range of use cases, including curricula vitae, official educational textbooks, student portfolios, lab manuals, and technical documentation.…
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MyST Markdown @mystmd.org · 07/11/2025
We recently pushed Jupyter Book 2, which was a breaking change for many of our users! We considered publishing a completely different package (e.g., `jupyter-book2`) but decided against it. Here's a quick rationale why:
blog.jupyterbook.org
Why we made a major release for Jupyter Book 2 instead of creating a new package - Jupyter Book: Blog
Updates from the Jupyter Book subproject.
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MyST Markdown @mystmd.org · 03/11/2025
JupyterBook 2 is released! This is now built on top of the @mystmd.org engine directly. 🚀 Please reach out on our GitHub discussions if you have any problems upgrading.
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MyST Markdown @mystmd.org · 29/10/2025
🚀💚
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SciPy Conference 2026 @scipyconf.bsky.social · 29/10/2025
🚀 Exciting news! The SciPy 2025 Proceedings are officially published: 👉 proceedings.scipy.org/2025 Huge thanks to the Proceedings Committee, @curvenote.com, Jim Weiss, all the authors, and reviewers who made this happen. 🙌
proceedings.scipy.org
Proceedings of SciPy 2025 - SciPy Proceedings
Proceedings of the Python in Science Conferences
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Continuous Science Foundation @continuous.foundation · 28/10/2025
@creativecommons.bsky.social and @continuous.foundation are teaming up to make reuse the default for modular science. Join the cohort working to shape incentives for reuse in modular science. The group will kick off in January 2026. Apply by Sunday, Nov 30 continuousfoundation.org/reuse-form
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MyST Markdown @mystmd.org · 22/10/2025
We're excited to share the next step of this project, and invite you to join us in improving this ecosystem together! 📝 Read the blog post: blog.jupyterbook.org/posts/2025-j... 📄 Read the paper 👉 proceedings.scipy.org/articles/hwc... ✨ Try Jupyter Book 2 👉 next.jupyterbook.org
proceedings.scipy.org
Jupyter Book 2 and the MyST Document Stack - SciPy Proceedings
Jupyter Book allows researchers and educators to create books and knowledge bases that are reusable, reproducible, and interactive. This new foundation introduces a scalable way to publish…
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MyST Markdown @mystmd.org · 22/10/2025
Combined with federated APIs and extensibility and modularity, Jupyter Book and MyST documents enable cross-project references, making scientific knowledge more interconnected.
proceedings.scipy.org
Jupyter Book 2 and the MyST Document Stack - SciPy Proceedings
Jupyter Book allows researchers and educators to create books and knowledge bases that are reusable, reproducible, and interactive. This new foundation introduces a scalable way to publish…
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MyST Markdown @mystmd.org · 22/10/2025
We're also excited to lean into "content as structured data". MyST documents are represented as a structured abstract syntax tree (AST), making them canonical and machine-readable. This enables powerful transformations and remixing across projects.
proceedings.scipy.org
Jupyter Book 2 and the MyST Document Stack - SciPy Proceedings
Jupyter Book allows researchers and educators to create books and knowledge bases that are reusable, reproducible, and interactive. This new foundation introduces a scalable way to publish…
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MyST Markdown @mystmd.org · 22/10/2025
There are several core principles behind this project: simple to use yet extensible machine-readable content modular & composable docs federated APIs computation as first-class content
proceedings.scipy.org
Jupyter Book 2 and the MyST Document Stack - SciPy Proceedings
Jupyter Book allows researchers and educators to create books and knowledge bases that are reusable, reproducible, and interactive. This new foundation introduces a scalable way to publish…
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MyST Markdown @mystmd.org · 22/10/2025
🚨 New paper! The @jupyterbook.org team just published a peer-reviewed paper in the SciPy Proceedings describing the design & architecture of Jupyter Book 2 and the MyST Document Engine! 📝 blog post: blog.jupyterbook.org/posts/2025-j... 📄 paper: proceedings.scipy.org/articles/hwc...
proceedings.scipy.org
Jupyter Book 2 and the MyST Document Stack - SciPy Proceedings
Jupyter Book allows researchers and educators to create books and knowledge bases that are reusable, reproducible, and interactive. This new foundation introduces a scalable way to publish…
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Stéfan van der Walt @mentat.za.net · 24/06/2025
@mystmd.org 1.5 is out, along with an updated web theme! github.com/jupyter-book... github.com/jupyter-book... Improved site footers, hidden entries and external URLs in table of contents, better UI for in-browser execution plus improved docs and bug-fixes.
github.com
Release mystmd@1.5.0 · jupyter-book/mystmd
(full changelog) Enhancements made 🗾 HTML Image Width #2111 (@rowanc1, @changeset-bot) 👽 Handle external URL specified in TOC #2102 (@stefanv, @fwkoch, @choldgraf, @mfisher87, @rowanc1, @changeset...
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Chris Holdgraf @choldgraf.com · 13/06/2025
Release notes from the 1.4 release of @mystmd.org - the team made a bunch of improvements on social media links, plugin functionality, and documentation for contributors and developers! github.com/jupyter-book...
github.com
Release mystmd v1.4.0 · jupyter-book/mystmd
(full changelog) Enhancements made 💬 Add social media project frontmatter #2021 (@kne42, @agoose77, @fwkoch, @rowanc1, @choldgraf, @artoftheblue) Complete ipynb export support #1915 (@kp992, @agoo...
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Chris Holdgraf @choldgraf.com · 25/05/2025
A Jupyter Book team goal over the past months has been improving the documentation for users and contributors in the @mystmd.org project. I wanted to share two important pages with big updates! A conceptual overview of MyST: mystmd.org/guide/overview Our developer guide: mystmd.org/guide/develo...
mystmd.org
Overview of the MyST stack - MyST Markdown
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Chris Holdgraf @choldgraf.com · 13/05/2025
The @mystmd.org theme now has support for "page edit" buttons! These take you directly to the source page in GitHub so that you can quickly make an edit. They are so useful! Many thanks to Kira for getting this in with her first contribution to the MyST Theme! github.com/jupyter-book...
github.com
✍️ Feat: add edit button by kne42 · Pull Request #577 · jupyter-book/myst-theme
Adds an edit button to pages that have GitHub repo information to edit the corresponding page on the site. closes #326
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Chris Holdgraf @choldgraf.com · 27/04/2025
Thanks to Stefan for a big-ish improvement to the contributing and developer documentation docs. This kind of thing is critical for growing an open source project like @mystmd.org and it's really hard to write when you've been working on it for a long time! github.com/jupyter-book...
github.com
Restructure developer guide and add architecture overview by stefanv · Pull Request #1906 · jupyter-book/mystmd
Hi folks 👋! I'm a developer from the Scientific Python ecosystem, who is new to mystmd, but who has some experience in building documentation tools. Such as the original SciPy Proceedings machi...
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Max Grover @mgroverwx.bsky.social · 28/04/2025
A @mystmd.org appreciation moment: making presentations with notebooks is SO much easier! I presented today with slides + notebooks on intake-esgf/intake-esm, with materials available on this website mgrover1.github.io/esds-intake-...
mgrover1.github.io
ESDS Presentation: Overview of intake-esm and intake-esgf - intake-esm vs. intake-esgf ESDS Presentation
Github Pages based template for hackathons
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pyOpenSci @pyopensci.org · 17/03/2025
🚀 You can now explore an analysis inside of a scientific paper! @row1.ca shows you how to connect data, software, and story into interactive, dynamic publications using @mystmd.org 📺 Watch now -> youtu.be/zrwt0PX5mdM?... #OpenScience #Reproducibility #science #opensource
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Chris Holdgraf @choldgraf.com · 27/02/2025
Wohoo we can define custom CSS stylesheets with @mystmd.org github.com/jupyter-book... (in the next release)
github.com
💇 Add support for user stylesheets by agoose77 · Pull Request #540 · jupyter-book/myst-theme
Fixes #321 by pulling in a user-defined stylesheet. Integrating Tailwind In #321, there is a brief discussion about the benefits of being able to use Tailwind. Integrating a pre-processor poses a c...
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MyST Markdown @mystmd.org · 19/02/2025
Excited to see the @turingway.bsky.social move to Jupyter v2, which is powered by mystmd.org. Check it out: book.the-turing-way.org Especially the glossary: book.the-turing-way.org/afterword/gl...
Deepdive links in the TuringWay.
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Elemental Microscopy @elementalmicrosc.bsky.social · 02/02/2025
Hey there 🦋🧪, we're a new open access microscopy journal and wanted to introduce ourselves! EM aims to modernize scientific publishing for microscopy, by prioritizing open science, transparency, and accessibility and using open-source formats and interactive notebooks 🙌 @curvenote.com @mystmd.org 🚀
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Chris Holdgraf @choldgraf.com · 29/01/2025
New MyST proposal! It's for a short-hand way to add classes/options/labels to roles and directives. Read and comment here: github.com/jupyter-book... This will unlock a lot of functionality for extending roles in particular, I'm really excited about it! (led by @row1.ca and @agoose77.bsky.social)
github.com
Inline Options for Roles and Directives by agoose77 · Pull Request #28 · jupyter-book/myst-enhancement-proposals
This is a WIP draft for adding "inline attributes" to MyST. Spec Issue: jupyter-book/myst-spec#68
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Chris Holdgraf @choldgraf.com · 09/01/2025
Woo! @mystmd.org can now hide inputs/outputs of jupyter notebook cells via tags! Thanks @row1.ca for the contribution! github.com/jupyter-book...
github.com
🙈 Hide Content based on tags by rowanc1 · Pull Request #517 · jupyter-book/myst-theme
Very very simple UI to get this feature possible: I am reusing the Dropdown. I am going to push this functionality over the line and then we can refine the UI. Fixes #50 Fixes jupyter-book/mystmd#...
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Mike Morrison @mikemorrison.bsky.social · 08/01/2025
Still science in 2024: "Our figure 2 shows this result clearly. Please scroll down 30 PAGES to see it..." PS with @curvenote.com journals, inline figures can go full-width, and any reference to a figure shows it in a hover popup.
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MyST Markdown @mystmd.org · 23/12/2024
Currently we are using markdown-it for the parsing, switching to remark will fix a lot for these positions especially. We currently don't have column information anywhere either. Hopefully a 2025 project!
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Fernando Pérez @fernandoperez.org · 09/12/2024
Great job by @row1.ca at the #AGU24 #OpenScience pavillion, discussing @mystmd.org and the future of scientific publishing
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Fernando Pérez @fernandoperez.org · 11/12/2024
At #AGU24? Interested in #OpenScience and reproducible pucñications with @projectjupyter.bsky.social @mystmd.org and @agu? Join us today at 6pm in Salon G for the Notebooks Now! Town Hall! agu.confex.com/agu/agu24/me...
agu.confex.com
Notebooks Now! What’s Next for the Computational Notebook Submission Format at AGU
Computational notebooks created using Jupyter and R Markdown, among other resources, fuse research narratives with code and data. At AGU, we are launching a new manuscript format using the computation...
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Fernando Pérez @fernandoperez.org · 08/12/2024
If you're at #AGU24, join us to see @row1.ca discuss some of the recent progress happening in the @mystmd.org @projectjupyter.bsky.social ecosystem! @stevejpurves.bsky.social and I will be there and would love to connect!
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Curvenote® @curvenote.com · 06/12/2024
Join Curvenote at #AGU24! where we are talking about #OpenScience computational notebook publishing, @mystmd.org and the future of science communication. 🌎 🚀 🧵 👇
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Matthew Feickert @matthewfeickert.com · 26/11/2024
#SciPy2025 save the dates and track listings announced today! www.scipy2025.scipy.org Tutorials: July 7-8, 2025 Conference: July 9-11, 2025 Sprints: July 12-13, 2025 and we're back in beautiful Tacoma, Washington!
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