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Cody Sheik

@microbesheik.bsky.social
275 followers 193 following 21 posts

I’m a geomicrobiologist with a geologically short attention span. AquaticGeomicro.com

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Cody Sheik @microbesheik.bsky.social · 17/04/2026
.@ace-gtdb.bsky.social is there any curation for the GTDB rRNA database? We found cases where a MAG incorporated into GTDB may have several 16S gene copies that have wildly different taxonomy but are all attributed to the MAGs GTDB taxonomy. Likely missed pre-ncbi contam screen before upload.
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Cody Sheik @microbesheik.bsky.social · 19/03/2026
Probably one of the best shipgoo stories so far! www.interlochenpublicradio.org/podcast/poin...
interlochenpublicradio.org
A Curious Case of Goo
After a boat captain notices strange black goo on his ship’s rudder, he scoops some of it into a cup. A few months later, that cup ends up in a lab, where scientists make a surprising discovery.
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Cody Sheik @microbesheik.bsky.social · 20/09/2025
New manuscript from the lab! Interesting story developing, we didn’t find any Aphanizomenon nitrogenase genes despite being the primary bloom former! Instead, Dolichospermum takes charge of fixing nitrogen during the bloom. www.sciencedirect.com/science/arti...
sciencedirect.com
Rare cyanobacteria drive nitrogen-fixation and cyanotoxin production in an Aphanizomenon-dominated bloom
Late summer, recurring cyanobacterial blooms in Lake of the Woods (LOW) are polycyanobacterial and typically dominated by Aphanizomenon flos-aquae. LO…
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Jeffrey Marlow @jjmarlow.bsky.social · 01/08/2025
Oh check it out, @microbesheik.bsky.social found some cool microbes in "mysterious goo" from a ship's rudder shaft...and I got to talk about it 😂 www.cnn.com/2025/08/01/s...
cnn.com
Scientists happened upon black goo on a ship — and discovered it was teeming with life | CNN
A Great Lakes research vessel had goo leaking from its rudder shaft. Scientists later found it contained previously undiscovered microorganisms.
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Cody Sheik @microbesheik.bsky.social · 24/06/2025
Nice to be out on the water taking samples! Fun teaching students over looked things like backing up a trailer and how to drive a boat! Also rinse those bottles! @mnseagrant.bsky.social
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Great Lakes Now @greatlakesnow.bsky.social · 20/06/2025
Researchers say the findings will help lead to better monitoring of blooms. www.greatlakesnow.org/2025/06/rese...
greatlakesnow.org
Research pinpoints type of blue-green algae that may produce toxins in Lake Superior estuary | Great Lakes Now
Researchers say the findings will help lead to better monitoring of blooms.
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Jay Austin @jaustinumd.bsky.social · 13/06/2025
If you want to keep your gear safe, DO NOT PUT IT IN THE LAKE. One of our buoys was just hit by a vessel (which will remain nameless here).
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Minnesota Sea Grant (MNSG) @mnseagrant.bsky.social · 06/06/2025
PhD student researcher Abby Smason, supported by #Minnesota Sea Grant, presented this week at #IAGLR25 on preliminary findings of a breakthrough discovery that identifies the bacteria behind toxins in the St. Louis River estuary. 🧪 📢 Get the full story: z.umn.edu/mnsg_25cyano... #GreatLakes
 sample of cyanobacteria collected from Pokegama Bay in September, 2024, as part of the Minnesota Sea Grant-funded Blooming Threats project. Image credit: Abby Smason/UMD.
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Cody Sheik @microbesheik.bsky.social · 23/04/2025
Great work from my graduate student Amanda on the cycling of organic sulfur in subsurface ecosystems! Turns out microbes are poised to use org S and we haven’t been paying attention! www.nature.com/articles/s41...
nature.com
The potential for coupled organic and inorganic sulfur cycles across the terrestrial deep subsurface biosphere - Nature Communications
Organic sulfur compounds are vital to life but often overlooked in the sulfur cycle, especially in the subsurface. Subsurface microbes can metabolize diverse organosulfur compounds, hinting at a more ...
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Cody Sheik @microbesheik.bsky.social · 11/03/2025
Has anyone experienced any metagenome assembly issues with the Aviti reads? Metaspades assemblies are awful compared to megahit but even the megahit assemblies aren’t great.
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Cody Sheik @microbesheik.bsky.social · 25/02/2025
MAG binning question: do you ignore smaller orphan bins that are likely parts of larger bins, or do you incorporate? If so what are you using?
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Robin Rohwer @robinrohwer.bsky.social · 03/01/2025
It has been amazing to continue this long-term research through a PhD with @quendi.bsky.social and a postdoc with @archaeal.bsky.social . Not everyone gets to see a project through like this as an ECR- thanks to supportive PI's and the NSF-PRFB fellowship that let me design my own postdoc 💙🧪
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Cody Sheik @microbesheik.bsky.social · 19/12/2024
This paper was over 10 years in the making!! I remember the many zoom and in person discussions! Congrats to all the people that have been a part of this work over the years, especially Rick and Mitch, and a HUGE thanks to @emilruff.bsky.social for his tenacity and bringing this to fruition!!
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Cody Sheik @microbesheik.bsky.social · 13/12/2024
Don’t forget abstracts are due Monday! Looking forward to some great microbial chats!
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Cameron Thrash @jcamthrash.bsky.social · 09/12/2024
The palaeoclimate potential of continental scientific drilling www.nature.com/articles/s41... #jcampubs
nature.com
The palaeoclimate potential of continental scientific drilling - Nature Geoscience
Nature Geoscience - The palaeoclimate potential of continental scientific drilling
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Cody Sheik @microbesheik.bsky.social · 09/12/2024
Looking for a session at IAGLR ‘25 to submit your micro focused abstract?? Consider session 17 Microbiology of Earth’s Great Lakes!
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Cody Sheik @microbesheik.bsky.social · 17/10/2024
Neat paper from my former postdoc on the seasonal turnover of Dolichospermum strains in the nearshore of Lake Superior! www.sciencedirect.com/science/arti...
sciencedirect.com
Spatiotemporal dynamics of cyanobacterium Dolichospermum lemmermannii populations in a bloom-prone region of Lake Superior
Cyanobacterial Harmful Algal Blooms (cHABs) are increasingly common in marine and freshwater environments, including the Laurentian Great Lakes (LGL).…
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Cody Sheik @microbesheik.bsky.social · 18/04/2024
Excited to see this paper by Chris Schuler on microbe-mineral biofilms at Soudan Underground Mine! Great team of Early Career students driving some great science! www.sciencedirect.com/science/arti...
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Cody Sheik @microbesheik.bsky.social · 01/03/2024
Glad to see this out and in review! Postdoc Andrew Wood looked at seasonal strain turnover of Dolichospermum in Lake Superior. biorxiv.org/cgi/content/... But not just Doli that has strain turnover!
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Cameron Thrash @jcamthrash.bsky.social · 01/03/2024
Spatio-temporal dynamics of cyanobacterium Dolichospermum lemmermannii populations in a bloom-prone region of Lake Superior www.biorxiv.org/content/10.1... #jcampubs
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Cody Sheik @microbesheik.bsky.social · 10/11/2023
Interested in Organic sulfur? Check out our new manuscript on how organic sulfur influences sediment biochemistry! aslopubs.onlinelibrary.wiley.com/doi/10.1002/...
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Cody Sheik @microbesheik.bsky.social · 03/11/2023
@drewsteen.bsky.social in Duluth giving a great Friday seminar!
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Cody Sheik @microbesheik.bsky.social · 01/11/2023
Apply to be our next Director of The Large Lakes Observatory! tinyurl.com/mmxe93dt scse.d.umn.edu/large-lakes-...
tinyurl.com
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Cody Sheik @microbesheik.bsky.social · 20/09/2023
Some days are better than others being a prof. Today was a good day! #LakeSuperior
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