Reposted by Susan CoxJulia Sero @cellmorphosero.bsky.social · 04/12/2025I can highly recommend! Excellent value. :) 123
Susan Cox @micoxscopy.bsky.social · 20/08/2025Our published version only deals with single colour data, but we are developing multi-colour analysis. Tests so far indicate an advantage to using one colour to obtain the pose and then limiting to finer alignments. Would be very happy to discuss your data! Always looking for new test cases. 110
Susan Cox @micoxscopy.bsky.social · 19/08/2025Some fowl play here: vision language models are biased against 3-legged chickens, say they have 2 or 4 legs vlmsarebiased.github.io 131
Susan Cox @micoxscopy.bsky.social · 12/08/2025Many thanks to my fantastic collaborators including @deathandthepenguin.bsky.social, @mmlab.bsky.social, @christlet.bsky.social, @georgelittlejohn.bsky.social, @katherine-baxter.bsky.social, @gailmcconnell.bsky.social, @superresolusian.bsky.social (5/5) 030
Susan Cox @micoxscopy.bsky.social · 12/08/2025If you’d like to try SQUASSH our code is on github and includes a colab notebook. github.com/edrosten/SQU... colab.research.google.com/github/edros... If your analysis requires a custom heterogeneity and you’d like some help, get in touch! (4/5)github.comGitHub - edrosten/SQUASSHContribute to edrosten/SQUASSH development by creating an account on GitHub. 231
Susan Cox @micoxscopy.bsky.social · 12/08/2025…and visualise structures and heterogeneity from the 8 nm alpha-tubulin repeat up to the mm scale.(3/5) 130
Susan Cox @micoxscopy.bsky.social · 12/08/2025By creating a structural model taking all the data into account and fitting the position, rotation, and heterogeneity in each observation of a structure, we can spot systematic biases in localisation microscopy data… (2/5) 130
Susan Cox @micoxscopy.bsky.social · 12/08/2025How do you quantify cell structures which are deformed between different observations? Our preprint shows how to perform Simultaneous QUAntification of Structure and Structural Heterogeneity (SQUASSH) on 3D fluorescence microscopy data. (1/5) www.biorxiv.org/content/10.1...biorxiv.orgExtracting biological structure and heterogeneity from the nano to the macro scaleFluorescence microscopy is an essential tool in biology. It has revealed great variability at multiple scales, in macromolecular complexes, cells, and organisms. Understanding this variability will re... 1276
