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Michael Aregger

@michaelaregger.bsky.social
124 followers 174 following 2 posts

Studying genetic interactions in cancer cells using CRISPR-based functional genomics approaches at NCI/NIH. Views are my own.

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Michael Aregger @michaelaregger.bsky.social · 10/02/2026
We’re excited to introduce scCHyMErA-Seq, a scalable #CRISPR-based #exon-deletion screening platform with #single-cell transcriptomic readouts, enabling high-throughput functional analysis of #alternative #splicing. In collaboration with the Gonatopoulos-Pournatzis lab. @natcomms.nature.com
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Single-cell exon deletion profiling reveals splicing events that shape gene expression and cell state dynamics
Nature Communications - Alternative splicing generates diverse protein isoforms, yet the functions of most exons remain unknown. Here, the authors introduce scCHyMErA-Seq, a scalable single-cell...
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Michael Aregger @michaelaregger.bsky.social · 31/12/2025
Check out the latest paper from the Gonatopoulos-Pournatzis lab using CRASP-seq, an RNA-coupled #CRISPR screening platform, to uncover novel #splicing regulators.
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Reposted by Michael Aregger
Leopold Parts @leopoldparts.bsky.social · 28/11/2024
www.nature.com/articles/s41... A collaborative project incepted by Michael Kosicki, and executed by Ananth Pallaseni (both Ph.D students at @sangerinstitute.bsky.social at the time) and Elin-Madli Peets.
nature.com
The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations - Nature Communications
Here the authors measure how the absence of certain DNA repair genes change the frequencies of unique mutational outcomes generated by Cas9 DSBs at synthetic target sequences in mouse embryonic stem c...
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