Logan Thrasher Collins @logantcollins.bsky.social · 16/08/2026Yes, but haven't had a chance to read yet. Thanks for the reminder! 010
Logan Thrasher Collins @logantcollins.bsky.social · 08/05/2026A nicely concise paper on antibody-linked lipid nanoparticles which target hematopoietic stem and progenitor cells in vivo, important yet tricky cell types to transduce for hematological gene therapy. pubs.acs.org/doi/10.1021/...pubs.acs.orgIn Vivo RNA Delivery to Hematopoietic Stem and Progenitor Cells via Targeted Lipid NanoparticlesEx vivo autologous hematopoietic stem cell (HSC) gene therapy has provided new therapies for the treatment of hematological disorders. However, these therapies have several limitations owing to the manufacturing complexities and toxicity resulting from required conditioning regimens. Here, we developed a c-kit (CD117) antibody-targeted lipid nanoparticle (LNP) that, following a single intravenous injection, can deliver RNA (both siRNA and mRNA) to HSCs in vivo in rodents. This targeted delivery system does not require stem cell harvest, culture, or mobilization of HSCs to facilitate delivery. We also show that delivery of Cre recombinase mRNA at a dose of 1 mg kg–1 can facilitate gene editing to almost all (∼90%) hematopoietic stem and progenitor cells (HSPCs) in vivo, and edited cells retain their stemness and functionality to generate high levels of edited mature immune cells. 020
Logan Thrasher Collins @logantcollins.bsky.social · 02/05/2026It's very sad that Craig Venter passed away. One of a few people I've admired since middle school. Truly a life well lived. www.nature.com/articles/d41...nature.comGenome pioneer Craig Venter dies: here’s how he transformed scienceVenter redrew the boundaries of biology — sequencing DNA at unprecedented speed, engineering synthetic life and charting ocean microbes. 000
Logan Thrasher Collins @logantcollins.bsky.social · 25/01/2026A valuable paper examining the presence of AAV manufacturing contaminants in a human patient’s liver. These results will hopefully be leveraged for improving the safety of gene therapies in the future. www.nature.com/articles/s41...nature.comContaminating plasmid sequences and disrupted vector genomes in the liver following adeno-associated virus gene therapy - Nature MedicineAnalyses of liver biopsies from a child with spinal muscular atrophy treated with adeno-associated virus gene therapy who developed hepatitis reveal contaminating manufacturing plasmids and disrupted ... 010
Logan Thrasher Collins @logantcollins.bsky.social · 03/01/2026I hope to at some point apply this knowledge towards gene therapy neurotech treatments for widespread mental illnesses. In the meantime, I hope you enjoy my writeup and the diagrams I made to illustrate it! logancollinsblog.com/2026/01/02/a...logancollinsblog.comAmygdala Structure, Function, and Clinically Relevant PathwaysPDF version: Amygdala Structure, Function, and Clinically Relevant Pathways – by Logan Thrasher Collins Anatomy The amygdala consists of nuclei which can be grouped into (i) the basolateral n… 010
Logan Thrasher Collins @logantcollins.bsky.social · 03/01/2026I have been exploring neural circuits of emotion in the brain lately, which led me to write this primer on the amygdala over the holidays!substack.comAmygdala Structure, Function, and Clinically Relevant PathwaysThis content is also available on my website: https://logancollinsblog.com/2026/01/02/amygdala-structure-function-and-clinically-relevant-pathways/ 131
Logan Thrasher Collins @logantcollins.bsky.social · 14/12/2025F. Scott Fitzgerald's life seems a turbulently intense, roller coaster ride of ups and downs. Though largely tragic, his story has a sort of colorful magnetism, embodying the wild human spirit that runs so strongly through his writings. Many lessons here. en.wikipedia.org/wiki/F._Scot...en.wikipedia.orgF. Scott Fitzgerald - Wikipedia 000
Logan Thrasher Collins @logantcollins.bsky.social · 05/12/2025Yaakub et al. demonstrate that transcranial ultrasound (TUS) in the nucleus accumbens (part of the reward system) alters human decision making for a probabilistic learning task. Participants were more likely to adopt a “win-stay” strategy when exposed to TUS. www.nature.com/articles/s41...nature.comNon-invasive ultrasonic neuromodulation of the human nucleus accumbens impacts reward sensitivity - Nature CommunicationsThis study shows that non-invasive ultrasound to the human nucleus accumbens can modulate deep brain activity and enhance reward-guided learning, offering a potential alternative to invasive neuromodu... 010
Logan Thrasher Collins @logantcollins.bsky.social · 03/12/2025Karfusehr et al. created “Dipids”, DNA origami disks with slanted edges that can act as dynamic units for assembly of compartments the size of small cells. The Dipid design parameters can also be varied to achieve interesting emergent properties! www.nature.com/articles/s41...nature.comSelf-assembled cell-scale containers made from DNA origami membranes - Nature MaterialsThrough the programmable self-assembly of lipid-inspired radially symmetric DNA, porous molecular membranes and cell-sized compartments are formed with applications in bottom-up biology and soft robot... 010
Logan Thrasher Collins @logantcollins.bsky.social · 02/12/2025UNESCO has put out the "first global normative framework on the ethics of neurotechnology". Hopefully this will stimulate governments to adopt appropriate regulations which help exciting new neurotechnologies move forward without causing harm! www.unesco.org/en/articles/...unesco.orgEthics of neurotechnology: UNESCO adopts the first global standard inToday UNESCO’s Member States took the final step towards adopting the first global normative framework on the ethics of neurotechnology. The Recommendation, which will enter into force on November 12 010
Logan Thrasher Collins @logantcollins.bsky.social · 30/11/2025Cool paper on a light-activated (optogenetic) multimerizing intrabody system for targeted protein degradation via the ubiquitin-proteasome pathway. pubs.acs.org/doi/10.1021/...pubs.acs.orgFLASH-AWAY: Intrabody-Directed Targeting of Optogenetic Tools for Protein DegradationProtein homeostasis, or proteostasis, is essential for cellular proteins to function properly. The buildup of abnormal proteins (such as damaged, misfolded, or aggregated proteins) is associated with ... 010
Logan Thrasher Collins @logantcollins.bsky.social · 27/11/2025Highly informative analysis of the challenges facing the biotech industry, some proposed solutions and their failings, and why aging treatments may revitalize biotech business if they can be developed successfully. www.ladanuzhna.xyz/writing/tril...ladanuzhna.xyzWhere are all the trillion dollar biotechs? — lada nuzhnaOf the many trends people chase in biotech, the only one that proves sure and consistent is declining returns. Even after adjusting for inflation, the number of new drugs approved per $1 billion of R&... 010
Logan Thrasher Collins @logantcollins.bsky.social · 25/11/2025A solid paper on using in situ sequencing to spatially measure base editing and prime editing in mice and macaques. Spatial differences across liver were surprisingly minimal. www.nature.com/articles/s41...nature.comSpatial profiling of gene editing by in situ sequencing in mice and macaques - Nature Biomedical EngineeringTargeted in situ sequencing directly maps editing rates at single-cell resolution in postmortem tissues to visualize base and prime editor delivery. 010
Logan Thrasher Collins @logantcollins.bsky.social · 13/11/2025An interesting article examining the resource and energy challenges facing those aiming to construct massive data centers. My hope is AI may drive more exploration of nuclear energy, though the article portrays the likelihood of this as fairly slim. asteriskmag.com/issues/09/ca...asteriskmag.comCan We Build a Five Gigawatt Data Center?—AsteriskBy 2030, leading AI labs will need data centers so massive they will require the power equivalent of some of America’s largest cities. Will they be able to find it? 000
Logan Thrasher Collins @logantcollins.bsky.social · 11/11/2025My seventh installment of interesting research papers that I have read over the past few weeks and would like to share with my community. Substack link: substack.com/home/post/p-...substack.comRoundup of Interesting Research Papers #7My seventh installment of interesting research papers that I have read over the past few weeks and would like to share with my community. 000
Logan Thrasher Collins @logantcollins.bsky.social · 05/11/2025It is also available on my website: logancollinsblog.com/2025/11/04/a...logancollinsblog.comAn Introduction to Ebolavirus BiologyPDF version: An Introduction to Ebolavirus Biology – Logan Thrasher Collins I wrote this educational primer as a fun exploration of a topic not related to my current research. While such kno… 000
Logan Thrasher Collins @logantcollins.bsky.social · 05/11/2025I wrote this educational primer as a fun exploration of a topic not related to my current research. While such knowledge may be useful in the event of a future ebolavirus epidemic, it is mostly an exercise in curiosity and intellectual enrichment. loganthrashercollins.substack.com/p/an-introdu...loganthrashercollins.substack.comAn Introduction to Ebolavirus BiologyNote: this content is also available on my website at https://logancollinsblog.com/2025/11/04/an-introduction-to-ebolavirus-biology/ 110
Logan Thrasher Collins @logantcollins.bsky.social · 23/10/2025My sixth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. loganthrashercollins.substack.com/p/roundup-of...loganthrashercollins.substack.comRoundup of Interesting Research Papers #6My sixth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. 020
Logan Thrasher Collins @logantcollins.bsky.social · 23/10/2025A nice primer article discussing the biology, structure, and dysfunction of the blood-brain-barrier. Quite useful for learning. #neurophysiology #biomedicine www.cell.com/current-biol...cell.comThe blood–brain barrierHere, Audrey Chagnot and Axel Montagne discuss the structural and functional features of the blood–brain barrier and the association of its disruption with various pathologies. 010
Logan Thrasher Collins @logantcollins.bsky.social · 16/10/2025Jung Soo Suk’s lab has developed nanoparticles consisting of DNA complexed with branched PEI and coated by PEG. Here, they show these nanoparticles diffuse widely into the mouse brain after intracranial injection as well as transduce neurons efficiently. pubs.acs.org/doi/10.1021/...pubs.acs.orgBioreducible Gene Delivery Platform that Promotes Intracellular Payload Release and Widespread Brain DispersionWe here introduce a novel bioreducible polymer-based gene delivery platform enabling widespread transgene expression in multiple brain regions with therapeutic relevance following intracranial convection-enhanced delivery. Our bioreducible nanoparticles provide markedly enhanced gene delivery efficacy in vitro and in vivo compared to nonbiodegradable nanoparticles primarily due to the ability to release gene payloads preferentially inside cells. Remarkably, our platform exhibits competitive gene delivery efficacy in a neuron-rich brain region compared to a viral vector under previous and current clinical investigations with demonstrated positive outcomes. Thus, our platform may serve as an attractive alternative for the intracranial gene therapy of neurological disorders. 040
Logan Thrasher Collins @logantcollins.bsky.social · 09/10/2025As a significant aside, these synthetic capsids can also transport nucleic acids (e.g. mRNAs) through lipid membranes, so they have great promise for gene therapy too (in my view)! 000
Logan Thrasher Collins @logantcollins.bsky.social · 09/10/2025Remarkable paper where the authors design an antimicrobial peptide (AMP) triskelion which assembles into a capsid-like structure. On binding bacterial surfaces, the capsids fall apart, AMPs insert into the membrane, and pores form which kill the bacteria.nature.comAntimicrobial peptide capsids of de novo design - Nature CommunicationsWith the growing threat of antibiotic resistance, unconventional approaches to antimicrobial discovery are needed. Here, the authors present a peptide topology that mimics virus architecture and assembles into antimicrobial capsids that disrupt bacterial membranes upon contact. 110
Logan Thrasher Collins @logantcollins.bsky.social · 09/10/2025I've greatly expanded my 'Notes on Ultrasound Physics and Instrumentation' to include detailed discussion of transducers, transducer arrays, and ultrasound pulse parameters in practice. Enjoy! Substack version: substack.com/home/post/p-... My Website version: logancollinsblog.com/2025/05/16/n...substack.comNotes on Ultrasound Physics and InstrumentationNote: this content is also available on my website at https://logancollinsblog.com/2025/05/16/notes-on-ultrasound-physics/ 000
Logan Thrasher Collins @logantcollins.bsky.social · 07/10/2025Fascinating paper wherein the authors collect multiomics data (genome, epigenome, transcriptome, metabolome, proteome, and microbiome) from a 116-year-old woman who lived to 117, uncovering insights about the biology of her exceptional longevity. A great read! www.cell.com/cell-reports...cell.comThe multiomics blueprint of the individual with the most extreme lifespanIn brief, Santos-Pujol and colleagues characterize the multiomics landscape of the human with the most extreme longevity. The study enables the association of advantageous genetic variants, an engaged... 000
Logan Thrasher Collins @logantcollins.bsky.social · 29/09/2025My fifth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. substack.com/home/post/p-...substack.comRoundup of Interesting Research Papers #5My fifth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. 010
Logan Thrasher Collins @logantcollins.bsky.social · 29/09/2025Cool paper wherein Kwak et al. inject into mice nanoparticles consisting of polymer-condensed plasmid DNA or mRNA coated in PEG and then leverage ultrasound-induced blood-brain-barrier opening to deliver the nucleic acids to desired brain regions. pubs.acs.org/doi/10.1021/...pubs.acs.orgBrain Nucleic Acid Delivery and Genome Editing via Focused Ultrasound-Mediated Blood–Brain Barrier Opening and Long-Circulating NanoparticlesWe introduce a two-pronged strategy comprising focused ultrasound (FUS)-mediated blood–brain barrier (BBB) opening and long-circulating biodegradable nanoparticles (NPs) for systemic delivery of nucle... 010
Logan Thrasher Collins @logantcollins.bsky.social · 26/09/2025Beyond mouse data, the study is supported by experiments on human biopsy samples as well as by human population data. All very impressive and has strong clinical potential. #alzheimersdisease #biochemistry 000
Logan Thrasher Collins @logantcollins.bsky.social · 26/09/2025A highly publicized paper providing solid evidence for the idea that lithium deficiency contributes centrally to Alzheimer's disease (AD) pathogenesis. Aron et al. also show in mice that lithium orotate supplementation might mitigate AD and brain aging. www.nature.com/articles/s41...nature.comLithium deficiency and the onset of Alzheimer’s disease - NatureLithium has an essential role in the brain and is deficient early in Alzheimer’s disease, which can be recapitulated in mice and treated with a novel lithium salt that restores the physiological level. 110
Logan Thrasher Collins @logantcollins.bsky.social · 21/09/2025Humans often underestimate cognitive abilities in animals. My guess is that we will find more complexity in their languages than we expect. Would be amazing if we could talk to them - lots of benefits in how it could change our society's attitudes. Link: www.nature.com/articles/d41...nature.comAI is helping to decode animals’ speech. Will it also let us talk with them?The complexity of vocal communication in some primates, whales and birds might approach that of human language. 010
Logan Thrasher Collins @logantcollins.bsky.social · 20/09/2025Acetylcholine-linked LNPs crossed the mouse BBB 3.6x more efficiently than untargeted LNPs. Additionally, the results were compared to an AI model’s predictions, highlighting the strengths and weaknesses of the computational approach. 000
Logan Thrasher Collins @logantcollins.bsky.social · 20/09/2025Highly informative paper! Various small molecules were linked to lipid nanoparticles (LNPs), improving the amounts of LNPs that crossed the blood-brain-barrier (BBB) in mice and in cell culture models of the BBB. Link: pubs.acs.org/doi/10.1021/... 110
Logan Thrasher Collins @logantcollins.bsky.social · 20/09/2025Interesting paper where microintravascular electrodes were inserted into cortical veins of pigs to record somatosensory and visual activity and to selectively stimulate motor areas. Compared to electrocorticography, this is a less invasive approach with similar capabilities. doi.org/10.1002/aisy...doi.orgMicroendovascular Neural Recording from Cortical and Deep Vessels with High Precision and Minimal InvasivenessIntravascular electroencephalography (ivEEG) using micro-intravascular electrodes was developed. Cortical-vein ivEEG showed a higher signal-to-noise ratio and finer spatial resolution of somatosensor.... 010
Logan Thrasher Collins @logantcollins.bsky.social · 15/09/2025An impressive achievement: Masullo et al. combine metabolic labeling and DNA-PAINT to image individual monosaccharide sugars in cell surface glycans at a resolution of 9 Å! That’s a resolution equivalent to 9 sulfur atoms in width! www.nature.com/articles/s41...nature.comÅngström-resolution imaging of cell-surface glycans - Nature NanotechnologyBy combining bioorthogonal metabolic labelling and resolution enhancement through sequential imaging of DNA barcodes, the molecular organization of individual sugars in the native glycocalyx has been ... 020
Logan Thrasher Collins @logantcollins.bsky.social · 13/09/2025Europe now has an exascale supercomputer which runs entirely on renewable energy. Of particular interest: one of the 30 inaugural projects for the machine focuses on realistic simulations of biological neurons (see www.fz-juelich.de/en/news/effz...) www.nature.com/articles/d41...nature.comMeet Europe’s first exascale supercomputer — can it compete in the global AI race?JUPITER, the European Union’s new exascale supercomputer, is 100% powered by renewable energy. What will researchers use it for? 020
Logan Thrasher Collins @logantcollins.bsky.social · 13/09/2025Climate change is driving an increase of deadly fungal diseases in humans and crops, yet solutions remain underdeveloped. PSA: if you're seeking problems to solve, you should keep this one in mind. #fungi issues.org/growing-thre...issues.orgFoiling the Growing Threat of Fungal PathogensClimate change, changing migration patterns, and our agriculture system have created a perfect environment for fungal pathogens to thrive. 000
Logan Thrasher Collins @logantcollins.bsky.social · 13/09/2025I too have suspected natural selection may play a fundamental physical role which extends beyond biology. The space-time manifold may possess some form of inevitable directional structure as a result. Extremely speculative, but interesting to think about. www.quantamagazine.org/why-everythi...quantamagazine.orgWhy Everything in the Universe Turns More Complex | Quanta MagazineA new suggestion that complexity increases over time, not just in living organisms but in the nonliving world, promises to rewrite notions of time and evolution. 000
Logan Thrasher Collins @logantcollins.bsky.social · 10/09/2025My fourth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. substack.com/home/post/p-...substack.comRoundup of Interesting Research Papers #4My fourth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. 010
Logan Thrasher Collins @logantcollins.bsky.social · 10/09/2025Liu et al. present a remarkably simple yet clever method of mitigating the effects of head-mounted microscopes on mouse behavior: they tethered a helium balloon to the microscope device to counter its weight! A fun and useful engineering solution! Link to article: www.nature.com/articles/s41... 020
Logan Thrasher Collins @logantcollins.bsky.social · 10/09/2025Somewhat older paper demonstrating utility of squaraine-rotaxane fluorophores for two-photon microscopy in vivo. These fluorophores approach the brightness of quantum dots while having much smaller size and better compatibility with cellular environments. Very cool research doi.org/10.1371/jour...doi.orgUltra-Bright and -Stable Red and Near-Infrared Squaraine Fluorophores for In Vivo Two-Photon ImagingFluorescent dyes that are bright, stable, small, and biocompatible are needed for high-sensitivity two-photon imaging, but the combination of these traits has been elusive. We identified a class of sq... 010
Logan Thrasher Collins @logantcollins.bsky.social · 08/09/2025An interesting organic chemistry investigation into how different substituent groups affect the energy barriers to rotational motion of a fancy-looking compound known as a bispidine. This research has implications for pharmaceuticals, molecular motors, and organocatalysts.pubs.acs.orgRotational Motion in Bispidines: A Conformational StudyA detailed conformational analysis of N-substituted bispidines has been performed to determine the factors governing the restricted rotational motion induced by the substituents. This investigation co... 000
Logan Thrasher Collins @logantcollins.bsky.social · 01/09/2025Interestingly, ~20 transferrins per nanoparticle resulted in the best BBB traversal, likely because these nanoparticles could bind a sufficient number of transferrin receptors while also having the ability to unbind the same receptors upon reaching the brain parenchyma. 010
Logan Thrasher Collins @logantcollins.bsky.social · 01/09/2025Informative paper examining how efficiently gold nanoparticles cross the blood-brain-barrier (BBB) when linked to varying numbers of transferrin proteins. Transferrin is known to cross the BBB via receptor-mediated transcytosis. www.pnas.org/doi/abs/10.1...pnas.orgTranscytosis and brain uptake of transferrin-containing nanoparticles by tuning avidity to transferrin receptor | PNASReceptor-mediated transcytosis across the blood–brain barrier (BBB) may be a useful way to transport therapeutics into the brain. Here we report th... 110
Logan Thrasher Collins @logantcollins.bsky.social · 01/09/2025Additionally, the virus was modified so that it can only be made inside cells infected by the bacteria, improving the overall safety of the system. 010
Logan Thrasher Collins @logantcollins.bsky.social · 01/09/2025Highly innovative study where engineered salmonella bacteria invade cells, persist within intracellular vacuoles, and then manufacture an oncolytic virus which kills the tumor cells and attracts the immune system. www.nature.com/articles/s41...nature.comEngineered bacteria launch and control an oncolytic virus - Nature Biomedical EngineeringCAPPSID relies on an engineered S. typhimurium to act as a synthetic ‘capsid’ to transcribe and deliver viral RNA inside cancer cells, launching a virus that can directly lyse surrounding cells. 110
Logan Thrasher Collins @logantcollins.bsky.social · 30/08/2025A promising Alzheimer's immunotherapy: engineered asymmetric anti-amyloid-β antibody with a transferrin receptor binding domain for crossing the blood-brain-barrier and a mutation which mitigates harmful side effects seen in past versions of this type of treatment. www.science.org/doi/10.1126/...science.orgTransferrin receptor–targeted anti-amyloid antibody enhances brain delivery and mitigates ARIAAmyloid-related imaging abnormalities (ARIA), side effects of anti-amyloid drugs seen in magnetic resonance imaging of the brain, are a major safety concern in patients with Alzheimer’s disease. We de... 020
Logan Thrasher Collins @logantcollins.bsky.social · 29/08/2025Link to post on my Substack: loganthrashercollins.substack.com/p/dopaminerg...loganthrashercollins.substack.comDopaminergic Neurons in the Ventral Tegmental Area as a Target for Treatment-Resistant DepressionThis content is also available on my website: https://logancollinsblog.com/2025/08/28/dopaminergic-neurons-in-the-ventral-tegmental-area-as-a-target-for-treatment-resistant-depression/ 000
Logan Thrasher Collins @logantcollins.bsky.social · 29/08/2025My purpose here is not to introduce an entirely novel concept, but rather to compile in one place a set of important explanations on how information flow in the reward system relates to TRD and how these reward system mechanisms may have clinical relevance. 000
Logan Thrasher Collins @logantcollins.bsky.social · 29/08/2025My writeup describing a reward system neural circuit which may serve as a useful target for new therapies aimed at fighting treatment-resistant depression (TRD). Link to post on my website: logancollinsblog.com/2025/08/28/d...logancollinsblog.comDopaminergic Neurons in the Ventral Tegmental Area as a Target for Treatment-Resistant DepressionPrelude This essay is intended as an intuitive examination of a reward system neural circuit which may serve as a useful target for new therapies aimed at fighting treatment-resistant depression (T… 200
Logan Thrasher Collins @logantcollins.bsky.social · 27/08/2025An extremely good read detailing reasons for the slowing pace of drug development, exploring the history of the biomedical industry, and offering suggestions for systemic changes which could accelerate the emergence of the life-changing medicines we need. atelfo.github.io/2023/12/23/b...atelfo.github.ioThe pharma industry from Paul Janssen to today: why drugs got harder to develop and what we can do about itPersonal site for posts about my interests: the biotech industry, medicine, molecular biology, neuroscience, biorisk, science, consciousness, AI, innovation, decision making, philosophy, games, sci-fi... 000
Logan Thrasher Collins @logantcollins.bsky.social · 14/08/2025Great paper which combines expansion microscopy and in situ genome sequencing to map chromatin structure and selected protein targets in cellular nuclei. ExIGS was then used to explore how lamin protein and genome organization within nuclei changes during aging. www.science.org/doi/10.1126/...science.orgExpansion in situ genome sequencing links nuclear abnormalities to aberrant chromatin regulationMicroscopy and genomics are used to characterize cell function, but approaches to connect the two types of information are lacking, particularly at subnuclear resolution. Here, we describe expansion i... 130