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Kim Reynolds

@kreynoldslab.bsky.social
475 followers 77 following 7 posts

Scientist, teacher, mentor, mom. Definitely not the gov of IA. Interested in systems biology, molecular evolution, bacterial genomes, protein engineering, and synth bio.

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Kim Reynolds @kreynoldslab.bsky.social · 12/08/2025
Excited to share our new review/perspective on how metabolic (and cellular) context shapes enzyme evolution. pubs.acs.org/doi/10.1021/...
pubs.acs.org
Considering Metabolic Context in Enzyme Evolution and Design
Enzymes are often treated as isolated molecular entities when measuring their biochemical activity and designing synthetic sequences. Yet inside the cell, enzymes interact through shared metabolite pools, physical binding, and regulatory feedback. This coordination is necessary for responsive, cohesive metabolic behavior. Moreover, these interactions place constraints on enzyme activity, specificity, abundance, and ultimately sequence. Defining these interaction-mediated constraints is important to understand metabolic evolution and to design synthetic systems. For example, the influence of the cellular and environmental milieu becomes evident when a heterologous enzyme from one species fails to function properly upon transfer to a new host. In this review we consider how cell context shapes enzyme evolution, and in turn, how variations in enzyme biochemistry, biophysics, and abundance impact cell fitness.
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Kim Reynolds @kreynoldslab.bsky.social · 09/07/2025
After 17 years at UT Southwestern (first as a postdoc, and then starting my lab), I'm excited to be starting a new chapter in The Jenkins Department of Biophysics, at Johns Hopkins University UTSW friends and colleagues, I will miss you very much!
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Reposted by Kim Reynolds
Calin Plesa @calin.bsky.social · 28/01/2025
New preprint! We carried out the largest complementation and inhibition study for diverse homologs in a single protein family (DHFR) to date. Highlights thread follows... 1/n 🧵
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Kim Reynolds @kreynoldslab.bsky.social · 14/11/2024
Combining experiment and computation to tackle scientific problems in the microbial world? Consider applying for our tenure track faculty search in microbial systems biology. Application deadline coming up, Nov 29.
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Kim Reynolds @kreynoldslab.bsky.social · 01/10/2024
Announcing a new tenure-track faculty search in microbial systems biology! Come join a fantastic ecosystem of systems biologists and informaticians. Application deadline is Nov 29. To apply: apply.interfolio.com/154339
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Kim Reynolds @kreynoldslab.bsky.social · 19/04/2024
Physical protein interactions constrain interface sequence. But what about non-binding "biochemical" interactions in metabolism? We used deep mutational scanning to map sequence constraints for two enzymes that catalyze consecutive metabolic reactions: rdcu.be/dE7xl
Cross section of an enzyme, color coded by mutational epistasis.
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Kim Reynolds @kreynoldslab.bsky.social · 09/02/2024
Our new work on (1) mapping genetic interactions in E. coli with titratable CRISPRi and then (2) using these data to build predictive gene expression -> growth rate models is out now in Cell Systems! doi.org/10.1016/j.ce...
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Kim Reynolds @kreynoldslab.bsky.social · 02/10/2023
Come join us! We're looking for not just one, but two postdoctoral fellows. We have one position open in biosynth pathway optimization, and another to examine how E. coli responds to perturbations in essential gene abundance. For details: www.utsouthwestern.edu/research/pos...
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Reposted by Kim Reynolds
Casey Greene @casey.greenelab.com · 19/09/2023
We're hiring a new faculty member in Clinical Informatics! Read more and apply at the link. cu.taleo.net/careersectio...
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