We often buy developer kits with grandiose industrial ambitions, only to leave half the shields sitting in parts drawers gathering dust. Recently, while clearing off my workbench, I grabbed an Elegoo Uno R3 clone paired with a ubiquitous 16x2 LCD keypad shield. The original plan was a quick telemetry display, but old gaming instincts took...

Part 4 of 5. Right now SimurgArray lives in a private repository on my own Git server. It has a license, a changelog, a user guide, wheels, a Docker image and a version number that just became 2.0.0. In other words, it looks public. It is not, yet. Publishing code is easy. Publishing it responsibly...

Part 3 of 5. "Benefit to humanity" is a big phrase for a tool that mostly reads binary files. I will try to keep this post the right size. SimurgArray will not cure anything. What it can do is lower a few barriers that currently decide who gets to do genetics research and how much...

Part 2 of 5. Whenever someone tells me they are writing their own genotype caller, my first instinct is to ask whether they have looked around. So it is only fair that I answer the same question about myself. I did look around. There is a lot of good work out there. Some of it...

Part 1 of 5. Every genotyping array tells a small story before it tells you anything about DNA. A glass slide goes into a scanner, the scanner writes two IDAT files per sample (one red, one green), and a few hundred thousand bead intensities wait for someone to turn them into genotypes. That someone is...

İlaçAtlas — T.C. Sağlık Bakanlığı TİTCK resmi onaylı 11.234+ ilaç, etkin madde eşdeğerleri, prospektüs (KÜB/KT), reçete etkileşimi ve klinik karar destek sistemi.

İlaçAtlas — T.C. Sağlık Bakanlığı TİTCK resmi onaylı 11.234+ ilaç, etkin madde eşdeğerleri, prospektüs (KÜB/KT), reçete etkileşimi ve klinik karar destek sistemi.

An end-to-end rare-disease variant triage platform: a Nextflow pipeline, three execution backends behind one API call, Terraform for two cloud tracks, and a phenotype-driven ranking measured against 10,178 published cases. Including the model metric that collapsed to exactly random once I removed the feature doing all the work.

[latexpage]https://github.com/lynchaos/biapy-hubhttps://lynchaos-biapy-hub-app-hlcmfj.streamlit.app/ If you have spent your machine learning career optimizing ResNets or YOLO on ImageNet and COCO, here is an inconvenient truth: standard computer vision has spoiled you. In standard computer vision, a batch is usually an RGB triplet $(B, 3, H, W)$ where $H, W \le 1024$. The pixels are isotropic, the spatial coordinates...

A Raspberry Pi Zero 2 W paired with a Sense HAT V2 runs a fully self-contained, edge-native machine learning weather station with no cloud, GPU, or heavy ML frameworks. The system uses pure NumPy implementations of Recursive Least Squares, Kalman filtering, conformal prediction, and drift detection, staying under 150 MB RAM. The station continuously updates...

Academic freedom is declining worldwide. Explore the latest rankings and see where the U.S. stands among its peers.

[latexpage] Repository: github.com/lynchaos/generative-microscopy Why this sketch I wanted to find out whether I could make something that genuinely looked like microscopy footage. Not cells bouncing around a canvas, but Saccharomyces cerevisiae behaving the way it actually behaves under a coverslip, seen through real glass and real light. The sketch began life as a generic n-body...

Screenshot I spend most of my working life thinking about what happens inside a stirred tank. Impeller tip speed, shear on the cells, the shape of the vortex that forms when you get the baffling wrong. So when I fell down the rabbit hole of p5.js code golf last week, it was probably inevitable that...

The Every Company's decision to manufacture its recombinant egg white protein OvoPro at ADM's Clinton, Iowa facility, alongside existing capacity at Huvepharma's Bulgarian subsidiary Biovet, illustrates a shift in how precision fermentation companies approach commercial scale-up. Rather than building proprietary plants, co-manufacturing allows capital to remain available for strain engineering and product development. The approach...