iiinova — where your digital self keeps evolving

Justin Westerfield @justmwest.bsky.social · 12/12/2025

How many editorial manager accounts is too many?

Justin Westerfield @justmwest.bsky.social · 08/09/2025

Progress report on my Relion bayesian polishing job on a local computer: ``` + Performing loop over micrographs ... 166.67/166.67 hrs .....................~~(,_,"> + Combining frames for micrographs ... 4.05/122.07 hrs .~~(,_,"> ``` I think it's going well. #CryoEM

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Justin Westerfield @justmwest.bsky.social · 09/08/2025

Zotero finally has an Android app 🙌

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Justin Westerfield @justmwest.bsky.social · 12/05/2025

SULF's Doctoral Candidate Assocation warns internationals against starting a PhD Sweden and it seems like most of the complaint is with Migrationsverket, the Swedish Migration Agency. The negative effects of these excessive wait times are starting to pile up. universitetslararen.se/2025/05/08/i...

universitetslararen.se

International PhD students advise against doctoral studies in Sweden - Universitetsläraren

Sweden is no longer an attractive country for international early-career researchers, says the SULF Doctoral Candidate Association in a new report.

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Justin Westerfield @justmwest.bsky.social · 12/05/2025

The number of postdocs employed in Sweden keeps going up. www.uka.se/om-oss/nyhet...

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Justin Westerfield @justmwest.bsky.social · 30/04/2025

The program is out for the 2025 Membrane Protein Folding GRS! Applications are open until the end of May. Join us this June in Castelldefels, Spain! 🧪🧬🥼🔬 www.grc.org/membrane-pro...

grc.org

2025 Membrane Protein Folding (GRS) Seminar GRC

The 2025 Gordon Research Seminar on Membrane Protein Folding (GRS) will be held in Castelldefels, Barcelona Spain. Apply today to reserve your spot.

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Reposted by Justin Westerfield

Katherine Stefanski @kmstefanski.bsky.social · 26/03/2025

Calling all membrane/membrane protein folks! Join us this summer in Barcelona for the Membrane Protein Folding Gordon Conference and Seminar. GRS chaired by @justmwest.bsky.social and myself! We are soliticiting abstracts from trainees for talks! Deadline - April 6. www.grc.org/membrane-pro...

grc.org

2025 Membrane Protein Folding (GRS) Seminar GRC

The 2025 Gordon Research Seminar on Membrane Protein Folding (GRS) will be held in Castelldefels, Barcelona Spain. Apply today to reserve your spot.

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Justin Westerfield @justmwest.bsky.social · 31/01/2025

Proteins preferentially insert into membranes that have a similar hydrophobic thickness to the protein, even without cells or chaperones! Implies sufficiency of physical properties of membranes and proteins for proper sorting to organelles. Cool paper! 🧪 doi.org/10.1038/s414...

doi.org

Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes - Nature Communications

The organization of membrane proteins is critical to cellular function. Here the authors explore how computational protein design, MD simulation, and cell-free systems can be combined to elucidate how...

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Justin Westerfield @justmwest.bsky.social · 24/01/2025

Very nice work outlining a new method to determine dimerization energies of TMDs in unbiased MD simulations 🧪

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Justin Westerfield @justmwest.bsky.social · 24/01/2025

My colleague and I are co-chairing the GRS on Membrane Protein Folding this Summer near Barcelona, Spain ⛱️ If you are a grad student or postdoc and work on membrane protein folding, apply! www.grc.org/membrane-pro...

grc.org

2025 Membrane Protein Folding (GRS) Seminar GRC

The 2025 Gordon Research Seminar on Membrane Protein Folding (GRS) will be held in Castelldefels, Barcelona Spain. Apply today to reserve your spot.

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Justin Westerfield @justmwest.bsky.social · 23/01/2025

I like my lab coats to feel like I'm wearing an armored vehicle but also a snuggie

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Justin Westerfield @justmwest.bsky.social · 22/01/2025

Just learned that one of the most productive scientists I know uses a cardboard box as a reference manager. I'll be over here existentially questioning the value of my neatly curated zotero library.

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Justin Westerfield @justmwest.bsky.social · 13/11/2024

Beautiful night in Stockholm 🌃

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Justin Westerfield @justmwest.bsky.social · 10/11/2024

If anyone knows of starter packs for biochemistry / biophysics, I would love to check them out!

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Justin Westerfield @justmwest.bsky.social · 08/11/2024

Goodreads has a popular list of books everyone should read. It's 33k books. Reading a book a day, this would take 90 years. Goodreads, this is not a serious list.

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Justin Westerfield @justmwest.bsky.social · 26/07/2024

Anyone familiar with BioPython? When I read a file with SeqIO, I see strange behavior. If I assign a SeqRecord object to a variable, it is only iterable once. In the code below, the output is nothing, but if I switch the print statement to the first loop it prints fine. What am I missing?

python code showing two for loops, where only the second one should print.

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Justin Westerfield @justmwest.bsky.social · 25/07/2024

Something tells me they did not, in fact, read my preprint.

Screenshot of email where they refer to a preprint titled ""

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Justin Westerfield @justmwest.bsky.social · 02/06/2024

Has anyone figured out how to name the individual chains for a job in the #Alphafold3 server? The output of a job with mutliple chains just has them labeled as A, B, C, etc.

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