Reposted by Jonas KöhlerMichele Invernizzi @invemichele.bsky.social · 09/05/2025We have a job opening at Peptone.io for an ML researcher. Come help us find new ways to understand and drug intrinsically disordered proteins (IDPs), it's a very interesting and important problem! Link in the reply ↓ 1177
Jonas Köhler @jonkhler.argmin.xyz · 19/04/2025Spending the Easter days prepping for #ICLR2025 in #singapore 😍🤩 If you want to meet/catch up on #CuspAI #AI4Science #MachineLearning and/or ML for #materials / #simulation ping me.! DMs are open :) My lovely colleagues Sina, @sindylowe.bsky.social and Govert are around too! 191
Reposted by Jonas KöhlerGuillaume Bellec @bellecguill.bsky.social · 04/01/2025The blog post of the late Felix Hill is powerful. Stress for AI researchers today is real. I did not know Felix Hill and I am sorry for those who did. This story is perhaps a reminder for students, postdocs, founders and researchers to take care of their well being. medium.com/@felixhill/2...medium.com200bn Weights of ResponsibilityThe Stress of Working in Modern AI 1207
Jonas Köhler @jonkhler.argmin.xyz · 28/12/2024github.com/jonkhler/blog/github.comGitHub - jonkhler/blog: a personal blog using minimal design principlesa personal blog using minimal design principles. Contribute to jonkhler/blog development by creating an account on GitHub. 020
Jonas Köhler @jonkhler.argmin.xyz · 28/12/2024I think my setup is fine now and quite minimal :) more joking about the universal urge of "maybe I should roll something myself..." 010
Jonas Köhler @jonkhler.argmin.xyz · 26/12/2024@imtd.bsky.social convinced me to turn my homepage into a blog. Not much content yet... Let's see if I stick to it: argmin.xyz.argmin.xyza blog 2180
Jonas Köhler @jonkhler.argmin.xyz · 25/12/2024Fun challenge that is apparently hard for LLMs (at least all those I could get my hands on): solving carefully drafted anagrams! New ARC challenge? :D PS: credits go to family Lehmann from Kassel who invent those ridiculously hard Xmas puzzles every year! 020
Jonas Köhler @jonkhler.argmin.xyz · 20/12/2024I should... But all the time. Man there are so many things I would love to write a blog about and I never find the time 🫣 110
Jonas Köhler @jonkhler.argmin.xyz · 20/12/2024Segment radixsort, prefixsums and pointwise transforms are just OPed on GPUs. The amount of throughput you can get on a single cheap device is ridiculous! And you can implement so much crazy stuff with just that. ❤️ 190
Reposted by Jonas KöhlerBálint Máté @balintmate.bsky.social · 17/12/2024hello bluesky! we have a new preprint on solvation free energies: tl;dr: We define an interpolating density by its sampling process, and learn the corresponding equilibrium potential with score matching. arxiv.org/abs/2410.15815 with @francois.fleuret.org and @tbereau.bsky.social (1/n) 13310
Jonas Köhler @jonkhler.argmin.xyz · 13/12/2024Well, in terms of adding to climate change both are not wrong 🫣 0110
Jonas Köhler @jonkhler.argmin.xyz · 06/12/2024You missed adding some GIF :)media.tenor.coman ostrich is standing in front of a fence with a horse in the background and a sign that says animal sanctuaryALT: an ostrich is standing in front of a fence with a horse in the background and a sign that says animal sanctuary 070
Jonas Köhler @jonkhler.argmin.xyz · 02/12/2024indeed - including less stress/boredom for the audience :D 020
Reposted by Jonas KöhlerMax Schambach @maxschambach.bsky.social · 02/12/2024I’ll be at NeurIPS next week –happy to connect! Hit me up if you’d like to meet up and chat :) (tabular deep learning; in-context learning; SSL; AI in EU; politics; where to get good coffee/food; your favourite Parks and Rec moment; …) 051
Jonas Köhler @jonkhler.argmin.xyz · 02/12/2024Also regarding this whole insecurity business: one can simply say "good question, honestly I don't know, maybe someone in the audience can help us to clear this up?". I would prefer to hear that a lot more - especially from senior academics - rather than assertive statements. 020
Jonas Köhler @jonkhler.argmin.xyz · 02/12/2024I am personally not at all impressed, intimidated or even excited by a polished business school or flawless but boring diplomat's talk. I personally prefer having one or two memes and puns on the slides so that I don't sleep away rather than boring but correct formal stuff... 110
Jonas Köhler @jonkhler.argmin.xyz · 02/12/2024More on the serious note: my personal advice - especially for many academics - 1. be yourself (=don't act like sb) 2. don't take things too seriously (yes even job talks) 3. don't learn your slides by heart - use them as a visual guide to tell a friend what excites you. 230
Jonas Köhler @jonkhler.argmin.xyz · 02/12/2024This reads like pickup artists giving presentation advice.... 2120
Jonas Köhler @jonkhler.argmin.xyz · 01/12/2024lets do #rust this year :) #AdventOfCode adventofcode.com/2024/day/1adventofcode.comDay 1 - Advent of Code 2024 060
Jonas Köhler @jonkhler.argmin.xyz · 01/12/2024Every two days I get this "invalid handle" label for my custom handle @jonkhler.argmin.xyz (using the DNS TXT config). This seems to be a bug - whenever I reset it, it's fine for another bunch of days. Anyone else experiencing this? If so, what's the cause/fix? #bluesky @jay.bsky.team 120
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024I guess reformulating the OT problem in a way that you minimize the total action along paths while matching the marginals would give you that. 010
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024And in the same way OT flow matching showed that there is more in these models than just getting a good marginal (here resulting in faster integration) you could also think about imposing physically amenable states all along the path. 100
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024That's all a bit hand wavy, but the idea would be: have equilibrium samples in A and B, learn transport maps between them, then study the paths learned to see where and how transitions actually happen. 100
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024Ah we chatted about applications for predicting trajectories instead of aiming for accurate T=0 images. In this context I remembered that folks looked into DMs to learn physically possible transition paths between two meta stable states using flow matching {...} + u(x) based constraints on paths. 120
Reposted by Jonas KöhlerGabriel Peyré @gabrielpeyre.bsky.social · 30/11/2024I wrote a summary of the main ingredients of the neat proof by Hugo Lavenant that diffusion models do not generally define optimal transport. github.com/mathematical... 523845
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024I read gossip that LoRa can bring down costs a lot! So maybe not that much? en.m.wikipedia.org/wiki/LoRaen.m.wikipedia.orgLoRa - Wikipedia 120
Reposted by Jonas KöhlerSander Dieleman @sedielem.bsky.social · 30/11/2024The link between diffusion models and optimal transport is still a bit of an enigma to me. One thing that's clear: different diffusion models trained on similar datasets tend to recover similar mappings. If these are generally not OT, in what sense are they optimal instead? 311411
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024Something that seems to be in this line of work: arxiv.org/abs/2410.15128arxiv.orgGeneralized Flow Matching for Transition Dynamics ModelingSimulating transition dynamics between metastable states is a fundamental challenge in dynamical systems and stochastic processes with wide real-world applications in understanding protein folding, ch... 130
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024More generally: lots of work in ML focuses on the result of the process (final images) and invariance under initialisation seeds. All interesting enough :) But the value of the actual trajectories is underexplored imho. There surely is tons of work already but still seems a bit niche. 120
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024Dinner table convo from yesterday: if we go from standard diffusion models to flow-matching/Schrödinger bridges and simply try to map two (general) densities onto. What kind of (stochastic) paths do we learn between them? And if it's all physical are those paths too? And if not how to enforce it? 230
Jonas Köhler @jonkhler.argmin.xyz · 30/11/2024Once made use of them for building C\infty smooth flows on compact spaces :) proceedings.neurips.cc/paper_files/...proceedings.neurips.ccSmooth Normalizing Flows 030
Reposted by Jonas KöhlerFrançois Fleuret @francois.fleuret.org · 29/11/2024I find strange that engineering the gradient radically to learn better is not a whole field. 9535
Reposted by Jonas KöhlerKosta Derpanis @csprofkgd.bsky.social · 28/11/2024See who has blocked you 🫣 and added you to a list on Bluesky. clearsky.app 6429
Jonas Köhler @jonkhler.argmin.xyz · 28/11/2024Yeah and obscure concurrency issues that you did not even think of before 🙄 110
Jonas Köhler @jonkhler.argmin.xyz · 28/11/2024The critical peak is 2021-2022 according to the data. Seems like you have some work to do until Christmas ;) 120
Jonas Köhler @jonkhler.argmin.xyz · 28/11/2024cuda level programming is fun - but also makes me curse a lot :D 280
Reposted by Jonas KöhlerMax Schambach @maxschambach.bsky.social · 28/11/2024I mean, we all know who the only true gold standard for AI publications is, and by that measure it’s not looking good! 391