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John Grimes @john-grimes.bsky.social · 21/09/2026

The R port of fhir-tx-encoder is out: turn SNOMED CT codes into ML features via a FHIR terminology server. Multi-hot sparse matrix, subsumption ancestors, a tidymodels recipes step, same output as the Python lib. github.com/aehrc/fhir-t...

github.com

GitHub - aehrc/fhir-tx-encoder: A tool for encoding FHIR terminology concepts for machine learning applications.

A tool for encoding FHIR terminology concepts for machine learning applications. - aehrc/fhir-tx-encoder

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John Grimes @john-grimes.bsky.social · 19/09/2026

Data Golf 2026, 10 days to go. Where it stands: 🥇 @marcusbaw.com 0.968 (73 entries) 🥈 FullySpecifiedNoName 0.950 (22) 🥉 Womp Ratter 0.948 (10) 10 teams, 156 submissions. The public board is scored on half the test data, so the final one may differ. www.kaggle.com/competitions...

A data analyst driving a figurative analytical golf ball leaving a resplendent trail of golden ontological goodness as it streaks past the Data Golf 2026 leaderboard.

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John Grimes @john-grimes.bsky.social · 14/09/2026

Signet is now open source, Apache 2.0. Multi-tenant SMART App Launch 2.2.0 authorisation server that sits in front of an existing FHIR server. Simulated EHR launch with seeded personas, configurable scope-to-claim mapping. github.com/aehrc/signet

github.com

GitHub - aehrc/signet: A SMART authorisation server.

A SMART authorisation server. Contribute to aehrc/signet development by creating an account on GitHub.

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Reposted by John Grimes

Marcus Baw @marcusbaw.com · 10/09/2026

UPDATE: I'm now in the lead! Sorry Shane! I'm not used to the AU edition, and am based in UK so there's been a serious learning curve on many of the questions... but the `sct` toolkit coped with its first non-UK SNOMED edition test without any problems. github.com/pacharanero/...

github.com

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John Grimes @john-grimes.bsky.social · 07/09/2026

One week into Data Golf, our SNOMED CT analysis competition on Kaggle: 26 entrants, 31 submissions, 4 teams on the board. Shane Byrnes leads on 0.916; Marcus Baw is at 0.872 after 25 entries. Results at SNOMED CT Expo in October. Still time to enter: www.kaggle.com/competitions...

kaggle.com

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John Grimes @john-grimes.bsky.social · 07/09/2026

Pathling can now answer SNOMED CT and FHIR terminology queries with no terminology server and no network connection. Release files import once into Delta tables; the same seven functions run against them. A full SNOMED CT UK edition fits in 536 MB of heap. pathling.csiro.au/blog/local-terminology

pathling.csiro.au

Local terminology mode | Pathling

Pathling 9.9.0 adds a local terminology mode. SNOMED CT and FHIR terminology

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John Grimes @john-grimes.bsky.social · 02/09/2026

Pathling server v3 is out. It implements the two SQL on FHIR 3.0.0 operations that just went to HL7 ballot, `$sql-run` and `$sql-export`, and lets you build SQL queries out of other SQL queries. pathling.csiro.au/blog/pathlin...

pathling.csiro.au

Pathling server 3.0.0 | Pathling

Pathling server 3.0.0 is now available. It lets you build SQL queries out of

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John Grimes @john-grimes.bsky.social · 28/08/2026

We have just launched a new Kaggle competition called "Data Golf"! ⛳️ This is your opportunity to test your #SNOMEDCT analysis skills in the lead up to #SCTExpo26 in October! 🥸 go.csiro.au/FwLink/data-... You have 1 month! 🏃 We'll be presenting the results back at the Expo!

go.csiro.au

Data Golf 2026

SNOMED CT data analytics

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John Grimes @john-grimes.bsky.social · 11/05/2026

Co-leading the SQL on FHIR track at HL7 Connectathon in Rotterdam this Sat + Sun, with Nikolai Ryzhikov, Adam Culbertson and Arjun Sanyal. Portable, tabular views over #FHIR data, run anywhere. Come help us improve the standard. confluence.hl7.org/spaces/FHIR/...

The SS Rotterdam with the SQL on FHIR balloon flying in the background.

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John Grimes @john-grimes.bsky.social · 24/01/2026

🚀 We've just released a fresh new Pathling server! Rebuilt from the ground up with #SQLonFHIR support ✨ #FHIR REST API, FHIRPath search, bulk data ops, auth, web admin UI, and Helm charts for K8s. Check out the blog post: pathling.csiro.au/blog/new-pat...

pathling.csiro.au

Introducing the new Pathling server | Pathling

We're excited to announce the release of a new Pathling server. This is a

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John Grimes @john-grimes.bsky.social · 24/01/2026

Hi all, happy to join you here on BlueSky! I've heard good things, looking forward to sharing some of my work.

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