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jianxuchen.bsky.social @jianxuchen.bsky.social · 10/10/2025

We hope this new INR-based image compression scheme provides a new perspective on microscopy data management. Personally, I find the flexible decoding scheme of INR-based compression has great potentials for visualizing and processing extremely large microscopy images.

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jianxuchen.bsky.social @jianxuchen.bsky.social · 02/07/2025

We have a new PhD position to work on large vision models and their applications in microscopy images. Come to join our highly diverse and interdisciplinary team in Dortmund, Germany. bewerbermanagement.net/jobposting/5...

bewerbermanagement.net

PhD Candidate (m/f/d): Analysis of Microscopic BIOMedical Images (AMBIOM)

Für die Abteilung IT-Services an unserem Standort in Dortmund suchen wir eine/n

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jianxuchen.bsky.social @jianxuchen.bsky.social · 26/06/2025

Data-Centric AI in Bioimaging! With 10+ researchers from U.S./Germany/China, we surveyed existing data centric AI works, put them in a bioimaging context, as a 4-stage prototypical framework. The paper is now on npj Imaging: www.nature.com/articles/s44.... We hope more BIA tools can be data-centric.

nature.com

Rethinking deep learning in bioimaging through a data centric lens - npj Imaging

Deep learning has become essential in bioimaging for tasks. By examining data-centric strategies in general AI and revisiting existing deep learning methods in bioimaging, we describe a prototypical “...

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jianxuchen.bsky.social @jianxuchen.bsky.social · 04/02/2025

We are hiring a new PhD for a bilateral CRCNS project between ISAS (Germany) and Stony Brook (USA) to build topology informed deep learning system for neuroscience. This position is at my group at ISAS in Germany (100% E13 level). DM me if you are interested in. The offical link will be up shortly.

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jianxuchen.bsky.social @jianxuchen.bsky.social · 24/01/2025

A new pre-print for our LSFM lovers in the bioimaging community: www.researchsquare.com/article/rs-5... (python + napari). We would love to hear your feedbacks. Thanks for the Peng Lab in Helmholtz Munich and the Huisken Lab in Göttingen for having us along the journey in this great collaboration.

researchsquare.com

Leonardo: A Toolset to Remove Sample-Induced Aberrations in Light Sheet Microscopy Images

Selective plane illumination microscopy (SPIM, also known as light sheet fluorescence microscopy) is the method of choice for studying organ morphogenesis and function, as it permits gentle and rapid ...

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jianxuchen.bsky.social @jianxuchen.bsky.social · 20/12/2024

Nice to see our paper online before the holiday: www.cambridge.org/core/journal... A very preliminary study on AI-based compression for microscopy images, resulted from a master thesis.

cambridge.org

Deep-learning-based image compression for microscopy images: An empirical study | Biological Imaging | Cambridge Core

Deep-learning-based image compression for microscopy images: An empirical study - Volume 4

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jianxuchen.bsky.social @jianxuchen.bsky.social · 16/12/2024

Look back at 2024, a year full of gratitude (thread) for myself and my group at Leibniz ISAS. (1) Community: As a young PI, I got tons of encouragement, trust and supports from the bioimaging and AI community. In early 2024, I was thrilled to organize my very-first Dagstuhl seminar on bioimaging AI.

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jianxuchen.bsky.social @jianxuchen.bsky.social · 12/12/2024

First post on Bluesky: if you are interested in doing a 100% fully funded PhD in Germany in multimodal bioimaging AI, drop me a message:)

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