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James Fellows Yates

@jfy133.genomic.social.ap.brid.gy
30 followers 0 following 63 posts

Bioinformatician in #Metagenomics, #Palaeogenomics / #aDNA, #Microbiomes. Loving #nextflow and #OpenScience. @MPI_EVA_Leipzig / @LeibnizHKI. Core team member of […] 🌉 bridged from ⁂ genomic.social/@jfy133, follow @ap.brid.gy to interact

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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 25/10/2026
♫ Top 5 artists of the Last.week: Fat Dog (100) Fontaines D.C. (68) Chalk (39) Clutch (32) Dolphin Hyperspace (24). #myweekcounted 659 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Fat Dog, Fontaines D.C., Chalk, Clutch, Dolphin Hyperspace
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 18/10/2026
♫ Top 5 artists of the Last.week: Fat Dog (33) Chalk (27) Rammstein (24) Fontaines D.C. (16) Devin Townsend Project (14). #myweekcounted 307 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Fat Dog, Chalk, Rammstein, Fontaines D.C., Devin Townsend Project
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 11/10/2026
♫ Top 5 artists of the Last.week: Fat Dog (30) Amon Amarth (21) Portugal. The Man (21) FKA twigs (18) Chalk (14). #myweekcounted 535 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Fat Dog, Amon Amarth, Portugal. The Man, FKA twigs, Chalk
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 04/10/2026
♫ Top 5 artists of the Last.week: Fat Dog (87) Musica Moralia (14) Repetitor (12) Viagra Boys (11) FKA twigs (9). #myweekcounted 552 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Fat Dog, Musica Moralia, Repetitor, Viagra Boys, FKA twigs
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 27/09/2026
♫ Top 5 artists of the Last.week: Grote Geelstaart (56) Amelie Lens (50) Devin Townsend (24) Lacuna Coil (24) Gåte (22). #myweekcounted 553 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Grote Geelstaart, Amelie Lens, Devin Townsend, Lacuna Coil, Gåte
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 30/08/2026
♫ Top 5 artists of the Last.week: Witch Club Satan (18) Temples (10) Weezer (9) Coldplay (6) The Hives (6). #myweekcounted 152 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Witch Club Satan, Temples, Weezer, Coldplay, The Hives
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 23/08/2026
♫ Top 5 artists of the Last.week: Wolf Alice (41) Vicky Arlidge (27) Karen Dió (19) Chelsea Wolfe (17) Gioachino Rossini (13). #myweekcounted 247 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Wolf Alice, Vicky Arlidge, Karen Dió, Chelsea Wolfe, Gioachino Rossini
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 26/07/2026
♫ Top 5 artists of the Last.week: Charli xcx (54) Honningbarna (24) Angine de Poitrine (14) Avenged Sevenfold (11) Neutral Milk Hotel (9). #myweekcounted 354 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Charli xcx, Honningbarna, Angine de Poitrine, Avenged Sevenfold, Neutral Milk Hotel
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 19/07/2026
♫ Top 5 artists of the Last.week: Bibi und Tina (43) Simone Sommerland (17) Honningbarna (13) The Berzerker (11) Vicky Arlidge (10). #myweekcounted 443 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Bibi und Tina, Simone Sommerland, Honningbarna, The Berzerker, Vicky Arlidge
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 12/07/2026
♫ Top 5 artists of the Last.week: Igorrr (58) DevilDriver (22) Fat Dog (19) Green Day (15) Angine de Poitrine (8). #myweekcounted 430 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Igorrr, DevilDriver, Fat Dog, Green Day, Angine de Poitrine
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 05/07/2026
♫ Top 5 artists of the Last.week: Die Antwoord (35) Cobrah (34) Fat Dog (34) Chalk (18) Crocell (15). #myweekcounted 492 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Die Antwoord, Cobrah, Fat Dog, Chalk, Crocell
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 28/06/2026
♫ Top 5 artists of the Last.week: The Kinks (125) Ecca Vandal (38) Hakushi Hasegawa (32) Devin Townsend (24) Cobrah (22). #myweekcounted 723 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands The Kinks, Ecca Vandal, Hakushi Hasegawa, Devin Townsend, Cobrah
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 21/06/2026
♫ Top 5 artists of the Last.week: Bibi und Tina (46) Lime Garden (44) blink-182 (28) Fat Dog (20) Simone Sommerland (13). #myweekcounted 542 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Bibi und Tina, Lime Garden, blink-182, Fat Dog, Simone Sommerland
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 14/06/2026
♫ Top 5 artists of the Last.week: Lime Garden (73) Marmozets (33) Pussy Riot (30) Mannequin Pussy (21) Metric (21). #myweekcounted 756 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Lime Garden, Marmozets, Pussy Riot, Mannequin Pussy, Metric
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 07/06/2026
♫ Top 5 artists of the Last.week: Nine Inch Nails (39) Genesis Owusu (33) Marmozets (33) David Bowie (24) Ecca Vandal (20). #myweekcounted 660 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Nine Inch Nails, Genesis Owusu, Marmozets, David Bowie, Ecca Vandal
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 24/05/2026
♫ Top 5 artists of the Last.week: Marmozets (46) Ecca Vandal (39) Wulfband (19) Devin Townsend (17) Dolphin Hyperspace (15). #myweekcounted 547 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Marmozets, Ecca Vandal, Wulfband, Devin Townsend, Dolphin Hyperspace
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 26/04/2026
♫ Top 5 artists of the Last.week: Dorian Electra (92) Metric (47) Ecca Vandal (42) Nine Inch Nails (36) Fcukers (25). #myweekcounted 755 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Dorian Electra, Metric, Ecca Vandal, Nine Inch Nails, Fcukers
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 19/04/2026
♫ Top 5 artists of the Last.week: Archspire (77) Enter Shikari (63) Mannequin Pussy (43) Karen Dió (28) Chalk (21). #myweekcounted 681 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Archspire, Enter Shikari, Mannequin Pussy, Karen Dió, Chalk
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 12/04/2026
♫ Top 5 artists of the Last.week: Enter Shikari (32) Angine de poitrine (29) Chalk (10) Gojira (9) Metric (5). #myweekcounted 256 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Enter Shikari, Angine de poitrine, Chalk, Gojira, Metric
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 05/04/2026
♫ Top 5 artists of the Last.week: Angine de poitrine (40) Chalk (22) Gelli Haha (18) Mallavora (17) Viagra Boys (17). #myweekcounted 493 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Angine de poitrine, Chalk, Gelli Haha, Mallavora, Viagra Boys
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 29/03/2026
♫ Top 5 artists of the Last.week: Princess Nokia (111) Dolphin Hyperspace (97) Banshee (24) Amon Amarth (23) Daniel Avery (18). #myweekcounted 732 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Princess Nokia, Dolphin Hyperspace, Banshee, Amon Amarth, Daniel Avery
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 22/03/2026
♫ Top 5 artists of the Last.week: Chalk (55) Rammstein (55) The Scratch (47) Marmozets (25) Peaches (24). #myweekcounted 757 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Chalk, Rammstein, The Scratch, Marmozets, Peaches
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 17/03/2026
X-post from Bluesky: 🧑‍💻Satellite Hackathon at #ViBioM2026! Join the #Virus #Bioinformatics + @nf_core Hybrid Collaborative #Hackathon & collaborate on bioinformatic tools and ideas & contribute to reproducible workflows & research infrastructure. Want to […] [Original post on genomic.social]
Small social media image with the following text:
 
17 May 2026 | Vilnius, Lithuania + online
Virus Bioinformatics + nf-core Hybrid Collaborative Hackathon
Calling all collaborative hackers!
Propose a project (with QR code)
Registration opens April 2026

Supported by the NFDI4Micorbiota, nf-core, and VirJenDB

A satellite event of EBVC ViBioM 2026
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 15/03/2026
♫ Top 5 artists of the Last.week: Chalk (62) Grossstadtgeflüster (35) The Scratch (29) Mitski (21) Lamb of God (16). #myweekcounted 642 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Chalk, Grossstadtgeflüster, The Scratch, Mitski, Lamb of God
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 13/03/2026
Really enjoying the full debut of industrial-tinged 'dance-punk' group Chalk! chalkbelfast.bandcamp.com/album/cry… #music #industrial #punk #electronicmusic #dance
Black and white album cover of a hand wearing a chaotically spiked glove
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 08/03/2026
♫ Top 5 artists of the Last.week: Grossstadtgeflüster (82) Vredehammer (67) ROSALÍA (27) Mitski (24) Deftones (18). #myweekcounted 218 Scrobbles with Lastfm #music via @lfm_blue
Collage of photos of the bands Grossstadtgeflüster, Vredehammer, ROSALÍA, Mitski, Deftones
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 01/03/2026
♫ Top 5 artists of the Last.week: Anneke van Giersbergen (19) Imogen Heap (15) Angine de poitrine (10) Wolf Alice (9) Cure For Paranoia (8). #myweekcounted 61 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 22/02/2026
♫ Top 5 artists of the Last.week: Anna von Hausswolff (30) Viagra Boys (30) Peaches (26) Julie Christmas (22) Angine de poitrine (16). #myweekcounted 124 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 15/02/2026
♫ Top 5 artists of the Last.week: Angine de poitrine (51) Sum 41 (23) Chalk (19) Mayhem (18) Ulver (17). #myweekcounted 128 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 09/02/2026
Just bought on #bandcamp : Angine de Poitrine Vol 1 by Angine de Poitrine anginedepoitrine.bandcamp.com/album… 🔺🔺🔺🔺🔺🔺🔺 (Thanks to my brother for sharing this WTF and their awesome KEXP session on YouTube) #music #rock #microtones #loops #wtf #aliens
Cartoon drawn album cover of polka dotted alien masks and the words 'agine de poitrine' at the top
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 08/02/2026
♫ Top 5 artists of the Last.week: Wolf Alice (76) MØL (42) Mandy, Indiana (22) Clown Core (21) Strapping Young Lad (17). #myweekcounted 178 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 01/02/2026
♫ Top 5 artists of the Last.week: Max Richter (73) The Birthday Massacre (18) Mammoth Weed Wizard Bastard (11) Chappell Roan (9) Piero Umiliani (6). #myweekcounted 117 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 25/01/2026
♫ Top 5 artists of the Last.week: Max Richter (137) Austra (40) My Chemical Romance (40) Poppy (29) Rotting Christ (16). #myweekcounted 262 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 18/01/2026
♫ Top 5 artists of the Last.week: Max Richter (120) Slugdge (42) Sault (40) Cradle of Filth (31) Ulver (22). #myweekcounted 255 Scrobbles with Lastfm #music via @lfm_blue
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 31/12/2025
Final part my unordered #AOTY #AOTY2025 #Music list: 🇬🇧 Who Let The Dogs Out by Lambrini Girls - lambrinigirlsband.bandcamp.com/albu… #rock #punk 🇺🇸 Switcheroo by Gelli Haha - gellihaha.bandcamp.com/album/switch… […] [Original post on genomic.social]
Album cover for Who Let the Dogs Out by Lambrini GirlsAlbum cover for album Switcheroo by Gelli HahaAlbum cover for album Stardust by Danny Brown
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 31/12/2025
Continuing my unordered #AOTY #AOTY2025 #Music list: 🇸🇪 ICONOCLASTS by Anna von Hausswolff - annavonhausswolff.bandcamp.com/albu… #alternative #atmospheric 🇬🇧 The Clearing by Wolf Alice - […] [Original post on genomic.social]
Album cover for ICONOCLASTS by Anna von HausswolffAlbum cover for the album The Clearing by Wolf AliceAlbum cover for the album All That Is Over by SPRINTSAlbum cover for the album Another Leaf by Genieve Artadi with Norbotten Big Band
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 31/12/2025
Whelp, just in time, but here is #AOTY #AOTY2025 #Music list, in no particular order: First starting off with 'missed in 2024' 🇫🇷 Mercedes by Malvina - open.spotify.com/album/5YZo8GF9HEyP… #hyperpop (⚠️ very NSFW […] [Original post on genomic.social]
Album cover of the album Mercedes by MalvinaAlbum cover of the album Soft Spot by HonningbarnaAlbum cover of the album The Hives Forever Forever The Hives by The HivesAlbum cover of the album Amen by IGORRR
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 11/12/2025
🙏 I want to acknowledge @NFDI4Microbiota @deNBI cloud, @seqeralabs @nextflowio Ambassador Program, and WorkAdventu.re for their various infrastructure support of the event [🧵 2/3]
Slide with text:
We will cover major steps of
meta-omic analyses:

Metataxonomic taxonomic classification
Metagenomic taxonomic classification
Metagenomic de novo assembly
Metatranscriptomics
Metaproteomics

And 15 Hexagon shaped pipeline logos
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 11/12/2025
🎉 Huge shout out to everyone who instructed and participated in yesterday's online Meta-*omics #Nextflow Pipeline Community Exhibition Day! 🧑‍🏫 Over 9 hours, we had 15 different pipelines demo'd by their lead developers, and giving an international cohort of […] [Original post on genomic.social]
Slide containing text:

Meta-*omics Nextflow pipeline community exhibition day

Organised by James Fellows Yates

Supported by NFDI4Microbiota, Nextflow Ambassador program, and deNBI
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 16/10/2025
Join us on December 10th for an online ‘Meta-*omics #Nextflow #pipeline community exhibition day’, for an intro and hands-on tutorial of #metagenomics #metataxonomics #metaproteomics #metatranscriptomics pipelines directly from the developers! Since the first […] [Original post on genomic.social]
Poster advertising an event

Meta-*omics
Nextflow Pipeline
Community Exhibition Day
Do you work with . Want to find out how to
metagenomics, metaxaxonomics, make your analysis more
metaproteomics, metatranscriptomics efficient, scalable, and
datasets? reproducible?
Meet developers for an introduction and practical hands-on demonstration of their meta-*omics Nextflow pipelines!
When is it happening? 
December 10th 2025. Times pending
Where is happening?
Online! Platform pending
 
What do you need?
- Ability to navigate the UNIX command line Online
- Be already familiar with basic theory/concepts  pjatform pending of the analysis of your meta-*omics data
- A computer, and an internet connection

Interested? Register your interest and choose your pipeline(s)
https://tally.so/r/31gJyQ

Supported by NFDI4MIcrobiota and NextflowAmbassadorsPoster advertising event

Featured pipelines

nf-core/createtaxdb (nf-co.re/createtaxdb)
nf-core/createtaxdb is a bioinformatics pipeline that constructs custom metagenomic classifier databases for multiple classifiers and profilers from the same input FASTA reference genome set in a highly automated and parallelised manner. 

Biobakery-nextflow (github.com/BonhamLab/biobakery-nextflow)
Shotgun metagenomics community profiling (taxonomic and functional) of Illumina short read data using the Biobakery suite of tools and databases. 

epi2me-labs/wf-metagenomics (github.com/epi2me-labs/wf-metagenomics)
Taxonomic classification of Nanopore sequenced metagenomic sequencing data and identification of antimicrobial resistance (AMR) or virulence genes. It includes an optional step to remove host sequences. It can also be run through the EPI2ME Desktop Application. 

nf-core/taxprofiler (nf-co.re/taxprofiler)
nf-core/taxprofiler is a pipeline for taxonomic classification and profiling of shotgun short- and long-read metagenomic data. It performs in-parallel taxonomic identification of reads or taxonomic abundance estimation with multiple classification and profiling tools against multiple databases, with standardised output profiles. 

(and more! Please contact James Fellows Yates for the rest of the list - hitting Alt text limits now)
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 08/10/2025
Do you perform analysis on #metagenomics, #metataxonomics #metatranscriptomics #metaproteomics datasets? Would you like to find out how to make your #bioinformatic analysis more efficient, scalable, and reproducible? Join us on December 10th for an online […] [Original post on genomic.social]
Poster advertising an event

Meta-*omics
Nextflow Pipeline
Community Exhibition Day
Do you work with . Want to find out how to
metagenomics, metaxaxonomics, make your analysis more
metaproteomics, metatranscriptomics efficient, scalable, and
datasets? reproducible?
Meet developers for an introduction and practical hands-on demonstration of their meta-*omics Nextflow pipelines!
When is it happening? 
December 10th 2026. Times pending
Where is happening?
Online! Platform pending
 
What do you need?
- Ability to navigate the UNIX command line Online
- Be already familiar with basic theory/concepts  pjatform pending of the analysis of your meta-*omics data
- A computer, and an internet connection

Interested? Register your interest and choose your pipeline(s)
https://tally.so/r/31gJyQ

Supported by NFDI4MIcrobiota and NextflowAmbassadorsPoster advertising event

Featured pipelines

nf-core/createtaxdb (nf-co.re/createtaxdb)
nf-core/createtaxdb is a bioinformatics pipeline that constructs custom metagenomic classifier databases for multiple classifiers and profilers from the same input FASTA reference genome set in a highly automated and parallelised manner. 

Biobakery-nextflow (github.com/BonhamLab/biobakery-nextflow)
Shotgun metagenomics community profiling (taxonomic and functional) of Illumina short read data using the Biobakery suite of tools and databases. 

epi2me-labs/wf-metagenomics (github.com/epi2me-labs/wf-metagenomics)
Taxonomic classification of Nanopore sequenced metagenomic sequencing data and identification of antimicrobial resistance (AMR) or virulence genes. It includes an optional step to remove host sequences. It can also be run through the EPI2ME Desktop Application. 

nf-core/taxprofiler (nf-co.re/taxprofiler)
nf-core/taxprofiler is a pipeline for taxonomic classification and profiling of shotgun short- and long-read metagenomic data. It performs in-parallel taxonomic identification of reads or taxonomic abundance estimation with multiple classification and profiling tools against multiple databases, with standardised output profiles. 

(and more! Please contact James Fellows Yates for the rest of the list - hitting Alt text limits now)
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James Fellows Yates @jfy133.genomic.social.ap.brid.gy · 07/10/2025
🎁 Another week, another pipeline release! 🚀 This week it's the latest version of @nf_core 's funcscan , assembled contigs and genomes for functional genes. 🥐 v3.0.0 French Chocolatine (in honour of @gau ), with major tool version upgrades for antiSMASH (for […] [Original post on genomic.social]
Pipeline diagram in the style of a london underground map for nf-core funcscan. There are three sections 1 for preprocessing, 2 for functional contig screening of ARG, AMP, and BGC with different tools, and finally results aggregation for summary outputs.
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