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James Cotton

@jamesacotton.bsky.social
608 followers 321 following 56 posts

I try and do comparative and population genomics of neglected tropical disease (and some other) parasites, as part of @sbohvm.gla.ac.uk at the @uofglasgow.bsky.social

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Reposted by James Cotton
Rod Page @rdmpage.bsky.social · 23/09/2026
Jobs galore at @nhm-london.bsky.social @dissco.bsky.social - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... including Heads of Digitisation and Technical Innovation
jobs.nhm.ac.uk
DiSSCo UK Digitiser:South Kensington
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James Cotton @jamesacotton.bsky.social · 07/09/2026
Please get in touch if you have questions, or apply by 5th October. You MUST apply via the online system: not to me! www.jobs.gla.ac.uk/job/research...
jobs.gla.ac.uk
Research Assistant /Research Associate
Job PurposeWe have an exciting opportunity for a Research Assistant/Associate to join our team in the School of Biodiversity, One Health &Veterinary Medicine. You will contribute to/make a...
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James Cotton @jamesacotton.bsky.social · 07/09/2026
I'm biased, but I think its a fantastic project, working with an amazing dataset that Liz has generated. We are looking for someone with strong genetic data analysis skills, but who can also translate genetic results into advice for the program, so communication is as important as technical skills
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James Cotton @jamesacotton.bsky.social · 07/09/2026
A post-doctoral position is available with Liz Thiele and I working on Guinea worm population genetics in support of the eradication program. Currently funded for a fairly short time, but with prospects of funding renewal.
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Reposted by James Cotton
Kathryn R Elmer @profkathrynelmer.bsky.social · 25/08/2026
We have a ca 1.5 yr postdoc available in our team, asking, 'what is the shape of the fitness landscape between oviparity and viviparity?' and 'what drives viviparity to evolve'? 🧬 using 🦎 as a model. closes 16 Sept. Details on EvolDir evoldir.net/brian/evoldi... @glasgow.ac.uk @sbohvm.gla.ac.uk
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James Cotton @jamesacotton.bsky.social · 21/05/2026
Please reach out to me if you have questions. You must apply via the 17th of June through the university of Glasgow website at: www.jobs.gla.ac.uk/job/research...
jobs.gla.ac.uk
Research Assistant/Associate
Job PurposeYou will contribute to/make a leading contribution to the project ‘Identifying drivers of schistosomiasis treatment failure and recommendations for treatment strategies (DRIVERS)’ workin...
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James Cotton @jamesacotton.bsky.social · 21/05/2026
We are looking for people with previous population genetics experience both in the lab and analysis, and with a passion for applying these techniques in the context of disease control.
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James Cotton @jamesacotton.bsky.social · 21/05/2026
We are recruiting! - looking for a post-doc to lead on the genetics part of a large multi-disciplinary study of the drivers of persistent schistosomiasis infection and re-infection with a bunch of great partners in Glasgow, the UK, Cameroon, Côte d'Ivoire and Malawi.
jobs.gla.ac.uk
Research Assistant/Associate
Job PurposeYou will contribute to/make a leading contribution to the project ‘Identifying drivers of schistosomiasis treatment failure and recommendations for treatment strategies (DRIVERS)’ workin...
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James Cotton @jamesacotton.bsky.social · 18/05/2026
Exactly this, except I was mostly too impatient so my Dad ended up typing most of them
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Reposted by James Cotton
Adam Hayward @adhayward.bsky.social · 10/04/2026
Exciting PhD opportunity on the ecological impacts of anthelmintic use on soil fauna, with a crack supervisory team and expertise from @glasgow.ac.uk, @hutton.ac.uk and @moredunfoundation.bsky.social! Find more details here: www.findaphd.com/phds/project...
findaphd.com
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James Cotton @jamesacotton.bsky.social · 10/04/2026
There is a PhD position on ecological impacts of anthelmintic usage on soil fauna. A great team of supervisors from 3 Scottish institutions.. fully funded for EU and UK applicants. www.findaphd.com/phds/project...
findaphd.com
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James Cotton @jamesacotton.bsky.social · 03/04/2026
Don't know about the weirdest, but St Swithun seems like the most British, who has doomed us to rainy summers because he didn't get buried in the rain like he wanted (or something like that..). Having read wikipedia, it seems like this might not be entirely historically accurate.
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James Cotton @jamesacotton.bsky.social · 19/02/2026
Roz Laing and I are looking for a combined lab manager/(PD)RA to contribute to ongoing projects in the lab: initially for 18 months but hopefully a longer-term post, subject to funding. Closing date is 23 March. Please get in touch if you have any questions about the role. tinyurl.com/246m632j
tinyurl.com
Research Assistant
We have an exciting opportunity for a Research Assistant to contribute to multiple veterinary parasitology projects, working with Professor James Cotton and Dr Roz Laing. The successful candidate w...
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James Cotton @jamesacotton.bsky.social · 14/02/2026
I discovered by accident that you need to go to builders merchants for blue roll.. on Great Western Road. www.screwfix.com/p/essentials...
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James Cotton @jamesacotton.bsky.social · 24/12/2025
Please also note that only a limited number of NorthwestBio studentships will be funded for international students, so competition for those places is likely to be extremely competitive.
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James Cotton @jamesacotton.bsky.social · 24/12/2025
Please note that you *must* apply through the NorthWest Bio system by 4th January at lnkd.in/etRp8szS. Writing to me or the other supervisors won't be counted as a valid application in time. www.gla.ac.uk/postgraduate... www.gla.ac.uk/postgraduate... www.gla.ac.uk/postgraduate...
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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James Cotton @jamesacotton.bsky.social · 24/12/2025
A slightly late pre-xmas reminder to please apply for these funded PhD positions in parasite genomics/genetics/molecular biology that I'm involved in – the closing date was extended and is now 4th January, so still time to put together an application.
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Reposted by James Cotton
Adam Hayward @adhayward.bsky.social · 12/11/2025
Exciting PhD opportunity on the ecological impacts of anthelmintic use on soil fauna, with a crack supervisory team and expertise from @hutton.ac.uk, @uofglasgow.bsky.social and @moredunfoundation.bsky.social! More info here: www.findaphd.com/phds/project...
findaphd.com
Ecological impacts of anthelmintic usage on soil micro- and mesofaunal communities at The James Hutton Institute on FindAPhD.com
PhD Project - Ecological impacts of anthelmintic usage on soil micro- and mesofaunal communities at The James Hutton Institute, listed on FindAPhD.com
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James Cotton @jamesacotton.bsky.social · 11/11/2025
I'm afraid i'm lowkey(generation_x). Proudly part of the first generation to be raised by video games and MTV.
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James Cotton @jamesacotton.bsky.social · 11/11/2025
Looking forward to seeing the R code for your next paper...
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Reposted by James Cotton
Roman Biek @rbiek.bsky.social · 09/11/2025
Come join us - we are recruiting a postdoc in phylodynamics and epidemiological modelling to join an exciting project on foot-and-mouth-disease virus in African buffalo www.jobs.gla.ac.uk/job/research... Please share widely! #jobs #disease #ecology #evolution #phylodynamics
jobs.gla.ac.uk
Research Assistant/Associate
Job Purpose You will contribute to an international collaborative project entitled “Multi-scale infection dynamics from cells to landscapes: FMD in African buffalo”, working with Prof Roman Biek. T...
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James Cotton @jamesacotton.bsky.social · 07/11/2025
This scheme funds PhD scholarships in Glasgow for black UK-domiciled students. I'm happy to support students interested in my research area, or try and help point potential applicants to more suitable supervisors if your interests don't quite match mine.
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Reposted by James Cotton
Richard McCulloch @rmc9z.bsky.social · 06/10/2025
Our lab has two funded PhDs to start in 2026 via the NorthWestBio programme Project details here www.gla.ac.uk/postgraduate... ...and here www.gla.ac.uk/postgraduate... Application deadline is Nov 21st 2025; apply here: www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Richard McCulloch
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James Cotton @jamesacotton.bsky.social · 07/10/2025
My colleague Roz Laing also has a veterinary parasitology project next year, investigating how epigenetics might be involved in mediating drug resistance in parasitic nematodes www.gla.ac.uk/postgraduate....
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Roz Laing
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James Cotton @jamesacotton.bsky.social · 07/10/2025
#3 Developing improved molecular diagnostics for Cryptosporidium in drinking water, and using these (and some genomics) to understand sources of contamination. Led by Frank Katzer at Moredun and Willie Weir in Glasgow www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Animal Biology in Health & Disease - Willie Weir
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James Cotton @jamesacotton.bsky.social · 07/10/2025
#2 - a project taking a comparative approach to DNA replication and plasticity/mutation in kinetoplastids, expanding work form the 'model' parasites to other kinetoplastid lineages, with Richard McCulloch and Sarah Allinson in Lancaster: www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Richard McCulloch
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James Cotton @jamesacotton.bsky.social · 07/10/2025
I'm also co-supervising a few other projects: #1: an inter-disciplinary project on chemical biology of Base-J in kinetoplastids, led by Glenn Burley @Strathclyde. We aim to develop some new chemical approaches and apply them to study kinetoplastid genetics. www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Underpinning Bioscience - Glenn A Burley
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James Cotton @jamesacotton.bsky.social · 07/10/2025
The link currently has the wrong text, but hopefully will be fixed soon. Please get in touch if you have questions, and apply by 21st November via the NorthWestBio system www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - How To Apply
NorthWest Bio is a new BBSRC-funded doctoral training partnership. Discover more about the programme and how to apply.
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James Cotton @jamesacotton.bsky.social · 07/10/2025
We have a PhD position in population genomics of sheep scab mites available from October 2026. The project will investigate Psoroptes populations in the context of eradication programs on Scottish island groups and spreading drug resistance. www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Animal Biology in Health & Disease - James Cotton
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James Cotton @jamesacotton.bsky.social · 27/06/2025
Univariate Regression Road Non-Parametric Parade If I ever build a housing estate, there will be no 'Oak Avenue'
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James Cotton @jamesacotton.bsky.social · 09/05/2025
Well done Lilly!
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James Cotton @jamesacotton.bsky.social · 09/05/2025
Well done Benedict!
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Reposted by James Cotton
School of Biodiversity One Health and Veterinary Medicine @sbohvm.gla.ac.uk · 25/04/2025
We are recruiting! Applications are open for Senior Lecturer/Lecturer in One Health Microbiology (Research & Teaching Track) grade 7/8/9. To apply, visit www.jobs.gla.ac.uk/job/senior-l... #worldchangerswelcome
jobs.gla.ac.uk
Senior Lecturer/Lecturer in One Health Microbiology (Research & Teaching Track)
This is the job description for the Senior Lecturer Grade 9 level. Please note the role is available at a Lecturer Grade 7 and 8 level. Please refer to the separate lecturer Grade 7/8 job descripti...
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Reposted by James Cotton
Gillian Dyer @gilly-bean.bsky.social · 24/03/2025
PhD Opportunity www.findaphd.com/phds/project...
findaphd.com
Where are all the lice? Development and deployment of molecular detection technologies to quantify salmon lice in Scottish waters. at University of Glasgow on FindAPhD.com
PhD Project - Where are all the lice? Development and deployment of molecular detection technologies to quantify salmon lice in Scottish waters. at University of Glasgow, listed on FindAPhD.com
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Reposted by James Cotton
Dr. Jen Irwin @drjenirwin.bsky.social · 21/03/2025
Academic colleagues, if we claim to value equity, and if it’s currently not safe for *some* of our colleagues to travel to the US for conferences, then should *any* of us be travelling to the US? Standing up for equity isn’t about our own convenience.
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James Cotton @jamesacotton.bsky.social · 10/03/2025
Possibly limited engagement. Does your network on here reach enough trilobite systematics influencers?
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James Cotton @jamesacotton.bsky.social · 10/03/2025
not completely, but its good that you are so motivated to look less like me.
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James Cotton @jamesacotton.bsky.social · 10/03/2025
Did you notice any way people can donate to the 'debt buying company' or similar things? Obviously I don't know the numbers but it seems like could be quite cost-effective philanthropy. We almost look like twins in our bsky profile pictures.. 😧
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Reposted by James Cotton
Trevor @trevorcotton.bsky.social · 10/03/2025
@mchshe.bsky.social Reading the Guardian this morning. You seem to be a good man. Your comment on powerlessness really resonated… I need to do more, and am fortunate enough to be able to make some small difference. Well done!
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James Cotton @jamesacotton.bsky.social · 03/03/2025
Tapeworm Echinococcus multilocularis: TCGGTCCTTACCTTGCAGTTTTGTATG doi: 10.1074/jbc.M006091200. tapeworm Hymenolepis diminuita: SL1: CGGTCTTACCATAAAACTTGTATG SL2: CCGGTCTTACCTTGCAATTTTTGTATG SL3: AATCGGTCTTACTGTACTAACTTGTATG doi: 10.1186/s12915-020-00899-w. thats all I can think of just now.
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James Cotton @jamesacotton.bsky.social · 03/03/2025
No worries - i'd forgotten the nematode literature on this so nice to remind myself. You did say 'keep it coming'.
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James Cotton @jamesacotton.bsky.social · 03/03/2025
The plant nematode Globodera pallida and G. rostochiensis have a bunch of different SLs (van Bers NEM: Characterization of genes coding for small hypervariable peptides in Globodera rostochiensis, PhD thesis. 2008, Wageningen (our paper doi.org/10.1186/gb-2... confirms this G. pallida, table S6)
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James Cotton @jamesacotton.bsky.social · 03/03/2025
The plant parasitic nematode Heterodera glycines has a bunch of alternative SLs too: (from doi.org/10.1038/s415...)
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James Cotton @jamesacotton.bsky.social · 03/03/2025
There are a bunch of other SL sequences in C. elegans that are used less commonly than SL1 and SL2 - the table here is from International Journal of Parasitology Vol. 26. No. IO, pp. 1025-1033. 1996
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James Cotton @jamesacotton.bsky.social · 03/03/2025
Hey Franck - the nematode Haemonchus contortus uses the same SL1 as C. elegans, but SL2 is different (GGTTTTAACCCAGTATCTCAAG). Both sequences show some variation (figure S8 of doi.org/10.1038/s420...).
doi.org
Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm - Communications Biology
Stephen Doyle et al. report the chromosome-scale genome assembly and transcriptome sequence data of Haemonchus contortus, a key parasitic nematode model. These data show nearly complete conservation o...
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James Cotton @jamesacotton.bsky.social · 26/02/2025
no worries - if i come across a good synthesis of the complex nematode ones I'll let you know. There is also trans-splicing in other flatworms, but not sure what the sequences are. It must be known in some e.g. Echinococcus and Hymenolepis, and probably Fasciola too.
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James Cotton @jamesacotton.bsky.social · 26/02/2025
And this one in Schistosomes: AACCGTCACGGTTTTACTCTTGTGATTTGTTGCATG I think PMID: 2247461 is the original reference
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James Cotton @jamesacotton.bsky.social · 26/02/2025
and some more in other nematodes: van Bers NEM: Characterization of genes coding for small hypervariable peptides in Globodera rostochiensis, PhD thesis. 2008, Wageningen: Wageningen University. I suspect there are a bunch in nematodes, but i'm not sure if there is a good single list somewhere..
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James Cotton @jamesacotton.bsky.social · 26/02/2025
Hi Franck. There are 15 SL sequences in Trichinella - table 2 of pmc.ncbi.nlm.nih.gov/articles/PMC...
pmc.ncbi.nlm.nih.gov
Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
The trans-splicing of short spliced leader (SL) RNAs onto the 5′ ends of mRNAs occurs in a diverse range of taxa. In nematodes, all species so far characterized utilize a characteristic, conserved spl...
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