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Hidehito Okada

@hokada89.bsky.social
22 followers 37 following 19 posts

大学院生、菌と他生物の相互作用に興味があります。Graduate Student, Natural History | Fungal Ecology | Mycoheterotrophy | Mycorrhiza | Rstats | Data Visualization. Opinions are my own. github.com/Hide-Fun

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Hidehito Okada @hokada89.bsky.social · 01/10/2026
Protoacia 拾った。
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Hidehito Okada @hokada89.bsky.social · 01/10/2026
Variation in arbuscular mycorrhizal status among cordate fern gametophytes in relation to phylogeny, habitat, and gametophyte structure www.researchsquare.com/article/rs-1...
researchsquare.com
Variation in arbuscular mycorrhizal status among cordate fern gametophytes in relation to phylogeny, habitat, and gametophyte structure
Ferns have two free-living generations in their life cycle, the sporophyte and the gametophyte, yet mycorrhizal associations in the gametophyte generation remain poorly understood. Arbuscular mycorrhi...
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Hidehito Okada @hokada89.bsky.social · 12/06/2026
真菌ゲノム読みたいやつが色々ある。いまやと ONT か PacBio か?
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Hidehito Okada @hokada89.bsky.social · 12/06/2026
Claude Fable に投げるちょうどいいタスクを思いついたので試している (生物学関連の話題はだいたいセーフガードにひっかかるためいいやつがなかった)。たしかにこれは良いかもしれない。
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Hidehito Okada @hokada89.bsky.social · 12/06/2026
Arabidopsis SWEET12 contributes to the regulation of sugar allocation and defense responses during interaction with Serendipita indica academic.oup.com/pcp/article-...
academic.oup.com
Arabidopsis SWEET12 contributes to the regulation of sugar allocation and defense responses during interaction with Serendipita indica
Abstract. Carbon availability is a central determinant of beneficial plant–fungal associations, and sugar transporters are key levers of this exchange. SWE
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Hidehito Okada @hokada89.bsky.social · 11/06/2026
Conserved symbiosis‐associated genes in the cycad Encephalartos natalensis suggest co‐option for cyanobacterial symbiosis - Schoeman - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com
Conserved symbiosis‐associated genes in the cycad Encephalartos natalensis suggest co‐option for cyanobacterial symbiosis
The heterocyst-rich Encephalartos natalensis cyanobacterial zone in coralloid root suggests co-option of conserved symbiosis-associated genes. This figure was created in BioRender (BioRender.com/http...
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Hidehito Okada @hokada89.bsky.social · 13/04/2026
Liu, J., Yan, S., Li, M. et al. Ancestral functionality and symbiotic refinement of NIN in root nodule symbiosis. Nat Commun (2026). doi.org/10.1038/s414...
doi.org
Ancestral functionality and symbiotic refinement of NIN in root nodule symbiosis - Nature Communications
Liu et al. show some non-symbiotic NIN orthologues can function in nodule symbiosis, indicating this ability predates nodulation. Analyses of subcellular localization and evolutionary conservation rev...
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Hidehito Okada @hokada89.bsky.social · 13/04/2026
Full article: Mycorrhizal specificity in orchids: a multidimensional filtering framework www.tandfonline.com/doi/full/10....
tandfonline.com
Mycorrhizal specificity in orchids: a multidimensional filtering framework
Understanding how specificity emerges in mutualistic symbioses remains a central challenge in evolutionary ecology. In orchids, mycorrhizal specificity ranges from strict specialization to broad ge...
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Reposted by Hidehito Okada
Jean-Michel Ané @jeanmichelane.bsky.social · 12/04/2026
Full article: Mycorrhizal specificity in orchids: a multidimensional filtering framework
sco.lt
Mycorrhizal specificity in orchids: a multidimensional filtering framework
Understanding how specificity emerges in mutualistic symbioses remains a central challenge in evolutionary ecology. In orchids, mycorrhizal specificity ranges from strict specialization to broad generalism. Although many orchids show low physiological specificity in vitro, natural populations associate with much narrower subsets of partners, indicating that realized specificity reflects constraints rather than compatibility alone. To provide a unified explanation and testable predictions for this discrepancy, we propose a multidimensional filtering framework that distinguishes physiological compatibility, representing the fundamental niche, from ecological filters that determine realized associations. Physiological compatibility, mediated by signal recognition and immune modulation, establishes the fundamental prerequisites for symbiosis. However, the transition to realized specificity is constrained by four hierarchical ecological filters. Phylogeny and biogeography first delineate the potential regional lineage pool, while local environmental heterogeneity restricts fungal availability. Subsequently, host-specific nutritional demands drive active partner selection, and interspecific competition enforces niche differentiation. This synthesis clarifies the observed discrepancy between fundamental and realized mycorrhizal niches and provides a conceptual foundation that may inform conservation strategies for endangered orchids through targeted ecological matching.
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New Phytologist @newphyt.bsky.social · 12/04/2026
#TansleyInsight: Novel roles of sulfur metabolism in stress-controlled stomata aperture regulation Sheng-Kai Sun, Rüdiger Hell & Markus Wirtz 👇 📖 nph.onlinelibrary.wiley.com/doi/10.1111/... #LatestIssue #PlantScience
Fig. 1 Schematic overviews of the sulfur assimilation pathway, the abscisic acid signaling pathway, and the regulatory function of the cysteine synthase complex.
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Hidehito Okada @hokada89.bsky.social · 13/04/2026
The floral illusion: A parasitic beetle mimics the scent of flowers to attract bees www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by Hidehito Okada
Ji Zhang @ecoloji.bsky.social · 01/04/2026
A comprehensive dated phylogeny of China’s vascular plants reveals a hidden global biodiversity hotspot rdcu.be/fa4eU
rdcu.be
A comprehensive dated phylogeny of China’s vascular plants reveals a hidden global biodiversity hotspot
Nature Ecology & Evolution - A dated phylogeny of 16,585 vascular plant species native to China reveals three major centres of endemism, including a potential new global biodiversity hotspot.
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Hidehito Okada @hokada89.bsky.social · 29/03/2026
そういえばプロジェクト・ヘイル・メアリーの映画観てきた。精神的にまいっているタイミングやったのもあって涙腺が死んだ。
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Hidehito Okada @hokada89.bsky.social · 29/03/2026
素晴らしい。Codex is 神。
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Hidehito Okada @hokada89.bsky.social · 28/03/2026
ラボ新入生用の資料を改訂。Codex があるおかげで作業が捗る (捗りすぎて時間が吸われるがデメリット)。
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Hidehito Okada @hokada89.bsky.social · 14/09/2025
Interesting paper ! Yuan et al. (2025) "Fungal symbiont Mycena complements impaired nitrogen utilization in Gastrodia elata and supplies indole-3-acetic acid to facilitate its seed germination." Plant Communications www.cell.com/plant-commun...
cell.com
Fungal symbiont Mycena complements impaired nitrogen utilization in Gastrodia elata and supplies indole-3-acetic acid to facilitate its seed germination
Nitrogen and auxin are critical for seed germination and development, but the fully mycoheterotrophic plant Gastrodia elata relies entirely on its symbiotic fungus Mycena for early growth. Genomic ana...
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Hidehito Okada @hokada89.bsky.social · 28/08/2025
I had a wonderful lunch with Dr. Vincent Merckx! Thanks @vincentmerckx.bsky.social (I'm sorry my English is poor...).
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Hidehito Okada @hokada89.bsky.social · 28/08/2025
Systematics and Plastome Evolution in Schizaeaceae. www.frontiersin.org/journals/pla...
frontiersin.org
Frontiers | Systematics and Plastome Evolution in Schizaeaceae
While the family Schizaeaceae (Schizaeales) represents only about 0.4% of the extant fern species diversity, it differs from other ferns greatly in gross mor...
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Hidehito Okada @hokada89.bsky.social · 22/08/2025
Anamorph of Botryobasidium sp. ? On dead wood, Kobe, Japan.
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Reposted by Hidehito Okada
Nature Plants @natplants.nature.com · 19/08/2025
New Article: "Arbuscular mycorrhizal association regulates global root–seed coordination" rdcu.be/eBmpX Global positive correlation between root diameter and seed size, driven by dual roles of arbuscular mycorrhiza in phosphorus uptake and pathogen defence.
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Nature Plants @natplants.nature.com · 02/05/2025
New Article: "Herbivory-induced green leaf volatiles increase plant performance through jasmonate-dependent plant–soil feedbacks" rdcu.be/ekpWa With News&Views: "Airborne cues shape soil legacies" rdcu.be/ekpWd
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Functional Ecology @funecology.bsky.social · 02/05/2025
📰Published📰 Receptor sensitivity to host-specific floral scents🌷 buff.ly/mUTHG7I 🧪🌍
buff.ly
Receptor sensitivity to host-specific floral scents
Katharina Brandt, Carlos Martel, Wittko Francke, Stefan Dötterl, Manfred Ayasse, Paulo Milet-Pinheiro This is a plain language summary of a Functional Ecology research article which can be found he…
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Hidehito Okada @hokada89.bsky.social · 31/12/2024
Happy New Year!
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Cameron Thrash @jcamthrash.bsky.social · 26/11/2024
Microbial trait multifunctionality drives soil organic matter formation potential www.nature.com/articles/s41... #jcampubs
nature.com
Microbial trait multifunctionality drives soil organic matter formation potential - Nature Communications
Soil microbes contribute to soil organic matter. Here, the authors explore how microbial traits contribute to organic matter accumulation, finding that synergies among fungal traits promote soil organ...
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Reposted by Hidehito Okada
Marc Somssich @somssich.bsky.social · 27/11/2024
📜 A nucleoside signal generated by a fungal endophyte regulates host cell death and promotes root colonization 🧑‍🔬 Nick Dunken, @algazuccaro.bsky.social, et al. 📔 Cell Host & Microbe 🔗 www.sciencedirect.com/science/arti... #️⃣ #PlantScience #PlantImmunity
sciencedirect.com
A nucleoside signal generated by a fungal endophyte regulates host cell death and promotes root colonization
The intracellular colonization of plant roots by the beneficial fungal endophyte Serendipita indica follows a biphasic strategy, including a host cell…
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Reposted by Hidehito Okada
Mario Vallejo-Marin @nicrodemo.bsky.social · 23/11/2024
This looks like a very interesting read! journals.biologists.com/dev/article/...
journals.biologists.com
Evolution and development of complex floral displays
Summary: There are over 300,000 species of flowering plants, with enormous variation in their floral display. This Review explores the development of this diversity, based on our understanding from mo...
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Reposted by Hidehito Okada
Marc Buée 🇨🇵 🇪🇺 🇺🇦 @mrmbuee.bsky.social · 23/11/2024
Compared to EM trees, AM trees may be better adapted to thrive under the effects of global warming. doi.org/10.1111/gcb.... Chari et al. November 2024 In Global Change Biology
doi.org
Long‐Term Soil Warming Drives Different Belowground Responses in Arbuscular Mycorrhizal and Ectomycorrhizal Trees
Using a 20-year-long soil warming experiment, we found that the belowground responses of temperate forest trees to warming varied depending on tree mycorrhizal type. Specifically, trees associating w...
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Reposted by Hidehito Okada
Dan Sloan @sloanevolab.bsky.social · 21/11/2024
Did you know that orchids have a big chunk of fungal mtDNA stuck in their own mitochondrial genomes?? In this new preprint, we found that fungal-derived tRNAs are functional in the orchid mitochondria. www.biorxiv.org/content/10.1... 1/4
The coral root orchid Corallorhiza maculata
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Reposted by Hidehito Okada
Joseph Holden @prof-joseph-holden.bsky.social · 21/11/2024
Our new paper out in Nature Communications led by Dafydd Elias sheds new light on how plant litter, microbes & soil minerals interact to develop mineral-associated soil organic carbon = crucial for long-term soil C storage rdcu.be/d0T4Q @natureportfolio.bsky.social @universityofleeds.bsky.social
rdcu.be
Microbial and mineral interactions decouple litter quality from soil organic matter formation
Nature Communications - This study challenges the hypothesis that high-quality plant litters form stable, mineral-associated soil organic carbon most efficiently, providing evidence that...
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Reposted by Hidehito Okada
Julianne Zelda Kiely 🌿Commissions open🌿 @palaeojules.bsky.social · 01/11/2024
Two weeks ago Dr Sandy Hetherington's paper on the importance of #fossils in understanding the #evolution of #plant development got released. I did a series of plant restorations for it, which I haven't been able to properly show off yet, so here's a thread on them all!! #FossilFriday #paleoart
A figure with fossil thin sections on the right, and four drawings of extinct plants in a column down the left. From top to bottom they are Sphenphyllum, Lasiostrobus, Lygnopteris and a Parasciadopitys-Telemachus tree.A family tree of mostly extinct plants, with drawings of Marchantia, Aglaophyton, Horneophyton, Huia, Asteroxylon, Lycopodium and Arabidopsis arranged from left to right.
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Functional Ecology @funecology.bsky.social · 18/11/2024
📰Published📰 What characteristics make frugivores good seed dispersers in a diverse community? buff.ly/4fHYJYC 🧪🌍
buff.ly
What characteristics make frugivores good seed dispersers in a diverse community?
Mariana Campagnoli, Alexander Christianini, Guadalupe Peralta This is a plain language summary of a Functional Ecology research article which can be found here. In tropical environments many fleshy…
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Hidehito Okada @hokada89.bsky.social · 17/11/2024
とりあえずこっちにもアカウントを作成した、現状はXのアカウントも維持します。I created an account here for now, but I will also maintain my account on X for the time being.
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