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HMMER

@hmmer.bsky.social
233 followers 126 following 87 posts

Biosequence analysis using profile hidden Markov Models. HMMER is managed by EMBL’s European Bioinformatics Institute (EMBL-EBI).

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HMMER @hmmer.bsky.social · 02/03/2026
📣 We're pleased to announce the reintroduction of the taxonomy restriction feature. Sequence searches can now be restricted to specific taxonomic groups, allowing more control over which species are included in the results. #bioinformatics #hmmer #proteins
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HMMER @hmmer.bsky.social · 11/07/2025
📣 We’re pleased to announce the release of jackhmmer. It’s now available for use, and we’d greatly value any feedback as we continue to improve the tool. www.ebi.ac.uk/Tools/hmmer/... Give it a try and share your thoughts! #bioinformatics #hmmer
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HMMER @hmmer.bsky.social · 07/05/2025
📣 We will be transitioning to a new website architecture on May 20, 2025. We will not be running a parallel system, so you may have to make a few changes, especially if you are using the API.
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HMMER @hmmer.bsky.social · 29/05/2019
Service will be interrupted tomorrow, Thursday 29th, 0700 - 1100 BST owing to planned infrastructure changes.
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HMMER @hmmer.bsky.social · 04/02/2019
search services will be effected by this. x.com/emblebi/status/10916708963376…
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HMMER @hmmer.bsky.social · 29/08/2018
The August release of @hmm3r is out! It now includes @ChEMBL as a searchable sequence database 🔎 Try it now at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 19/07/2018
Try the latest version of @hmm3r with the brand new @uniprot data. You can submit your search here 🔎 www.ebi.ac.uk/Tools/hmmer/search x.com/uniprot/status/10195921149324…
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HMMER @hmmer.bsky.social · 26/06/2018
Ever had too much data in your taxonomy tree?🌳 Try the new fisheye mode in the latest release of @hmm3r (“taxonomy” tab in your results) here www.ebi.ac.uk/Tools/hmmer/search/ph… This visualisation uses this library github.com/ProteinsWebTeam/taxonomy…
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HMMER @hmmer.bsky.social · 25/06/2018
Try the latest version of @hmm3r with the new @uniprot data. You can submit your search here 🔎 www.ebi.ac.uk/Tools/hmmer/search/ph… x.com/uniprot/status/10101904578953…
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HMMER @hmmer.bsky.social · 08/06/2018
🚨 @hmm3r website availability at risk on Saturday 9th June 🚨 Due to important system maintenance at the @emblebi, the Hmmer Website might become unavailable for some time tomorrow afternoon (UK time). 🚧 Sorry for the inconvenience.
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HMMER @hmmer.bsky.social · 04/06/2018
website now makes available @ensembl release 92 and @ensemblgenomes release 39. Try searching these databases now at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 31/05/2018
Try the latest version of @hmm3r with the new @uniprot data. You can submit your search here 🔎 www.ebi.ac.uk/Tools/hmmer/search/ph… x.com/uniprot/status/99932211102081…
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HMMER @hmmer.bsky.social · 15/05/2018
Are you experimenting with @BioSchemas? Have a look at the @hmm3r website. Pages are now annotated with structured data and result pages include current version of @BioSchemas annotations for protein, structures, and protein annotations. www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 11/05/2018
📢 With our newest release, you can now search the TreeFam database. Try it here www.ebi.ac.uk/Tools/hmmer/search/hm… and select the “TreeFam” option. www.treefam.org
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HMMER @hmmer.bsky.social · 08/05/2018
You can try the latest version of @hmm3r with the new @uniprot data. Give it a go at www.ebi.ac.uk/Tools/hmmer/search/ph… x.com/uniprot/status/99124131656148…
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HMMER @hmmer.bsky.social · 08/02/2018
The latest version of the @hmm3r website now contains the latest release of @ensemblgenomes, version 38. Try it now at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 01/02/2018
This data release is already included in the new release of the @hmm3r website. Search @uniprot release 2018_01 at www.ebi.ac.uk/Tools/hmmer/search/ph… x.com/uniprot/status/95873650280828…
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HMMER @hmmer.bsky.social · 24/11/2017
📢 New version of the @hmm3r website available with MEROPS database version 12. Try it now at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 23/11/2017
📢 New version of the @hmm3r website available with the new 2017_11 release from @uniprot (see x.com/uniprot/status/93337471561537… …) Try it now at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 08/11/2017
📢 New version of the @hmm3r website available with @CATHDatabase Gene3D version 16.0 Try it now at www.ebi.ac.uk/Tools/hmmer/search/hm…
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HMMER @hmmer.bsky.social · 02/11/2017
📢 New version of @hmm3r website available with the brand new 2017_10 release from @uniprot. Try it now at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 03/10/2017
And the data is already available in the new version of the @hmm3r website! Search the latest @uniprot data now at www.ebi.ac.uk/Tools/hmmer/search/ph… x.com/uniprot/status/91370490730324…
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HMMER @hmmer.bsky.social · 02/10/2017
🔐 Remember that the switch is happening today, during the next hours. If your script starts failing please check the URL you are using. x.com/hmm3r/status/9101342364343050…
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HMMER @hmmer.bsky.social · 29/09/2017
📢 The new version of the @hmm3r website is out. It now includes @ensembl 90 and @ensemblgenomes 37. Try it at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 07/09/2017
Some servers stopped overnight, causing searches to be unavailable this morning. Everything should be back to normal now, sorry about that.
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HMMER @hmmer.bsky.social · 11/07/2017
In jackhmmer searches you now have the “unselect all” option for easier sequence selection across iterations. Try it www.ebi.ac.uk/Tools/hmmer/search/ja…
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HMMER @hmmer.bsky.social · 07/07/2017
Try the @hmm3r website here www.ebi.ac.uk/Tools/hmmer/search/ph… …. The latest version includes @ensembl release 89 and @ensemblgenomes release 36.
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HMMER @hmmer.bsky.social · 06/07/2017
New @uniprot release, and the data is already available to search from in our latest @hmm3r release. give it a go at www.ebi.ac.uk/Tools/hmmer/search/ph… x.com/uniprot/status/88262176900118…
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HMMER @hmmer.bsky.social · 08/06/2017
Give the new version of @hmm3r a go at www.ebi.ac.uk/Tools/hmmer/search/ph…. Now with the latest @uniprot June 2017 release
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HMMER @hmmer.bsky.social · 22/05/2017
Try out hmmscan on the @hmm3r website at www.ebi.ac.uk/Tools/hmmer/search/hm… Gene3D results are now post-processed w/ @CATHDatabase's cath-resolve-hits
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HMMER @hmmer.bsky.social · 18/05/2017
Try the @hmm3r website here www.ebi.ac.uk/Tools/hmmer/search/ph…. The latest version includes @ensembl release 88 and @ensemblgenomes release 35.
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HMMER @hmmer.bsky.social · 12/05/2017
May version of @hmm3r is out! Including @uniprot data version 2017_05. Try it at www.ebi.ac.uk/Tools/hmmer
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HMMER @hmmer.bsky.social · 04/05/2017
New in @hmm3r: explore x-refs to @emblebi resources in your results. Data from @emblebies's EBI Search. Try it now www.ebi.ac.uk/Tools/hmmer
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HMMER @hmmer.bsky.social · 03/05/2017
New @hmm3r release: website redesigned following the new @emblebi visual guidelines ✨ Try it today at www.ebi.ac.uk/Tools/hmmer
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HMMER @hmmer.bsky.social · 24/03/2017
New in March release of @hmm3r: Integration of MEROPS (merops.sanger.ac.uk) as supported seq database. Try it at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 22/03/2017
March version of @hmm3r is out! It includes @uniprot data version 2017_03. Try it at www.ebi.ac.uk/Tools/hmmer/search/ph…
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HMMER @hmmer.bsky.social · 17/03/2017
March version of @hmm3r released! Now with brand new ✨Pfam 31.0✨ from @Xfam_EBI x.com/Xfam_EBI/status/8394835995063… Try it at www.ebi.ac.uk/Tools/hmmer/search/hm…
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HMMER @hmmer.bsky.social · 20/02/2017
February version of @hmm3r website released, with latest version of @uniprot. Try it now at www.ebi.ac.uk/Tools/hmmer @emblebi @EBItraining
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HMMER @hmmer.bsky.social · 02/12/2016
December version of @hmm3r released! New: 🔎 search in the @ensembl database available. Try it now @ www.ebi.ac.uk/Tools/hmmer
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HMMER @hmmer.bsky.social · 01/12/2016
December version of @hmm3r released! New: Pfam (@Xfam_EBI) 📍active sites📍 now included in the searches. Try it now @ www.ebi.ac.uk/Tools/hmmer
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HMMER @hmmer.bsky.social · 12/09/2016
Maintenance is over, we are back! 🎉 www.ebi.ac.uk/Tools/hmmer Sorry for the long disruption, everything should be working now.
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HMMER @hmmer.bsky.social · 02/09/2016
It seems the @hmm3r website will still be down until at least the beginning of next week because of hardware issues. x.com/emblebi/status/77138741544550…
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HMMER @hmmer.bsky.social · 26/08/2016
The @hmm3r website will be down later today due to essential maintenance 🚧. see x.com/emblebi/status/76881560175840… We'll be back on August 30th.
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HMMER @hmmer.bsky.social · 20/06/2016
HMMER website updated, with Pfam v30.0 (@Xfam_EBI), Ensembl Protists and Ensembl Plants (@ensemblgenomes) www.ebi.ac.uk/Tools/hmmer
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HMMER @hmmer.bsky.social · 02/05/2016
Apologies for the short notice: the website searches will be briefly unavailable this morning, 2nd May.
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HMMER @hmmer.bsky.social · 22/02/2016
HMMER website back and and updated to @uniprot release 2016_02.
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HMMER @hmmer.bsky.social · 16/02/2016
Owing to maintenance the website and searches will be offline this Thursday 18th from 0830 GMT. Apologies for any inconvenience.
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HMMER @hmmer.bsky.social · 26/01/2016
The HMMER website has just been updated to the latest @uniprot release 2016_01. Also includes @ensemblgenomes plants as target database.
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HMMER @hmmer.bsky.social · 13/07/2015
Come and see the live @HMMER demo #ismb2015 at 12:20pm, Wicklow Hall 2B (TT04).
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HMMER @hmmer.bsky.social · 30/06/2015
The HMMER website has just been updated to the latest @uniprot release 2015_07!
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