iiinova — where your digital self keeps evolving

Harikrishnan Ramadasan

@harirmds.bsky.social

12 followers 22 following 0 posts

PhD @CompOmics.com

Posts Replies Media

Reposted by Harikrishnan Ramadasan

CompOmics @compomics.com · 16/06/2025

From PTMs to proteins, from metadata to metaproteomics. CompOmics has got you covered at #EuPA2025!

Plenary talk

Lennart Martens
Rise of the Robots – definitely artificial, somewhat intelligent

Keynote lecture

Tim Van Den Bossche
Improving metaproteomics data analysis with the Ghent Metaproteomics Toolbox

Oral presentations

Harikrishnan Ramadasan
Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0

Robbe Devreese
Collisional cross-section prediction for peptides and small molecules: covering all bases (and bridging the gap?)

Robbin Bouwmeester
Challenges and opportunities in modification searches for DIA proteomics

Educational session

Lennart Martens
No more surprises: AI predictions in MS DDA and DIA data interpretation

Robbin Bouwmeester
A deep dive into limitations of modification searching for DIA data

Caroline Jachmann
Fantastic PTMs and how (not?) to find them using msqrob2PTM -
a real-life journey

Poster presentations

Enrico Massignani
Overcoming challenges in non-canonical protein searches with OpenProt and ionbot

Pathmanaban Ramasamy
Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability

Toon Callens
Advancing tissue prediction using read-based DNA methylation modelling towards a multi-omics integration

Tine Claeys
MLMarker: Data-driven discovery of tissue similarity and biomarkers

Alireza Nameni
Enhancing peptide-spectrum match identification with non-linear models in Mokapot: Assessing complexity, overfitting, and false discovery rates

Tim Van Den Bossche
The Metaproteomics Initiative: An international community by and for metaproteomics researchers

Award presentations

Tine Claeys
Bioinformatics Award

Tim Van Den Bossche
Vision & Commitment Award

0228

Reposted by Harikrishnan Ramadasan

Tine Claeys @tineclaeys.bsky.social · 13/06/2025

We are working on an AI based metadata extraction pipeline from papers, supplementary files and mass spectra. Come to @harirmds.bsky.social's talk at #EuPA2025 for the newest and hottest results!

0103

Reposted by Harikrishnan Ramadasan

EuBIC-MS @eubic-ms.org · 13/06/2025

Join us in Saint-Malo for the #EuBIC-MS session at #EuPA2025! After a short introduction, we have three exciting talks lined up, as well as an interactive discussion on open issues in computational proteomics. @eupaproteomics.bsky.social @uszkoreitju.bsky.social @harirmds.bsky.social

EuBIC-MS session at EuPA 2025
Tuesday June 17, 10:15 - 12:00, Room Vauban 1

Ralf Gabriels
Introducing EuBIC-MS
10:15 - 10:30

Julian Uszkoreit
O85 - What can we gain - a comparison of common search engines and post-processing methods
10:30 - 10:45

Yannic Chen
O84 - Benchmarking Database Search Engines for DDA-based Immunopeptidomics
10:45 - 11:00

Harikrishnan Ramadasan
O86 - Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0
11:00 - 11:15

Interactive discussions on open challenges in computational proteomics
11:15 - 12:00

194

Reposted by Harikrishnan Ramadasan

Magnus Palmblad @magnuspalmblad.bsky.social · 10/02/2025

Wonderful and productive @eubic-ms.org Developers' Meeting in Neustift, South Tyrol, hacking proteomics and metabolomics software and metadata standards for five days!

0267

Reposted by Harikrishnan Ramadasan

Tine Claeys @tineclaeys.bsky.social · 07/02/2025

The @eubic-ms.org Dev Meeting was amazing! We explored how to automatically extract metadata. I'm super excited to continue this effort 🤗 A huge thanks to the incredible team of this hackathon 🙏 #EuBIC2025

172