iiinova — where your digital self keeps evolving

Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 03/10/2026

all bots. just hundreds of bot sign ups a day.

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 22/05/2026

As far as i know the SLURM scheduler was named after the drink in futurama.

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 02/05/2026

It's caturday. Post some mother liking cats.

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 04/04/2026

BRIG v1.1.1 release. There's some minor quality of life changes but the key thing is fixing the GC Skew and Content graphs for small reference sequences (plasmids), from the chunky and blocky histogram, we now have a much smoother solution. Download from […] [Original post on mstdn.science]

Circular genome comparison figure showing GC Content and GC Skew

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 26/03/2026

Been working on a browser version of BRIG. No install. Interactive. Looking for beta testers; message me if you're interested.

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 13/11/2025

Folks been asking for a searchable catalogue for microbinfie podcast. With a 147 episodes, and 78+ guests its getting hard to find episodes of your interest. anyway, i wrote a catalogue www.happykhan.com/microbinfie see all our lovely guests at www.happykhan.com/microbinfie/guests

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 19/09/2025

Come see my poster at IMMEM Poster 151. 🔬 QualiBact – provides robust, data-driven QC thresholds for 304 bacterial species, built from >2.4M assemblies (AllTheBacteria + RefSeq). ⚙️ SpecCheck – an open-source command-line tool that applies these standards […] [Original post on mstdn.science]

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 17/09/2025

If you're at IMMEM. please come by and see "my" poster on vaccines.watch Otherwise please read the preprint. www.biorxiv.org/content/10.1101/202…

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 21/05/2025

It all begins for #ABPHM2025 with keynote from Johanna Hanefeld (RKI).

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 22/04/2025

Huge disparity in genomic data: We support all efforts to increase the genomic surveillance of pathogens on a global scale as dynamics differ locally: what happens in one place does not translate to another and high-risk clones can emerge anywhere […] [Original post on mstdn.science]

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 22/04/2025

Always-on: all QC’d genomes with geotemporal metadata, are ingested from archives, analysed in pathogen.watch and results visualised within amr.watch. Data are extracted and updated every 4h, with observed trends therefore only delayed by time to […] [Original post on mstdn.science]

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 22/04/2025

We show disparities between high- and low- income settings, indicate vast gaps in our knowledge globally and highlight the need for ongoing,structured surveillance combined with timely data deposition (including metadata) to support public health

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Nabil-Fareed Alikhan @happykhan.mstdn.science.ap.brid.gy · 22/01/2025

Enjoying the new who to follow feature. Helping with discovery

Screenshot of who to follow window in mastodon.

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