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GenomiqueENS

@genomiqueens.bsky.social

Genomics core facility of IBENS @ibensens.bsky.social - Ecole Normale Supérieure @normalesup.bsky.social - @psl-univ.bsky.social #Nanopore #transcriptomics #SingleCellRNAseq #eucaryotes #low-input website: genomique.biologie.ens.fr

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GenomiqueENS @genomiqueens.bsky.social · 19/03/2026

Have you ever wondered how the nanopores look like on the MinION Flow Cell from @nanoporetech.com ? We did it for you with the Spinning disk W1 Yokogawa Sora Nikon microscope thanks to the @ibensens.bsky.social Imaging plateform IMACHEMENS ! 🔬 Isn't that hypnotic?! 🎇 😵‍💫

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GenomiqueENS @genomiqueens.bsky.social · 27/01/2026

Our expertise in single-cell transcriptomics in organisms with fragmentary annotation is illustrated by this new study in chick, revealing new roles for Cdkn1 in the neurogenic transition.

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GenomiqueENS @genomiqueens.bsky.social · 15/12/2025

Are you working with exotic/non-model species? 🐸🐠🐓🦋🐝 Your annotation needs improvement to ensure RNA-seq or single-cell RNA-seq counts are correctly handled (for exemple the 3’UTRs)?

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GenomiqueENS @genomiqueens.bsky.social · 10/12/2025

🧬Searching for a Nanopore RNA-seq protocol that generates longer reads than the manufacturer’s protocol, and applicable for low-input material ? 🤔

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GenomiqueENS @genomiqueens.bsky.social · 01/12/2025

🎉 We are very proud of Ali Hamraoui who defend his PhD thesis on bioinformatics approaches to study isoforms with single-cell long-read technologies.

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GenomiqueENS @genomiqueens.bsky.social · 30/07/2025

🚀 Our new preprint is now live on bioRxiv! “A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data” 🔗 Read here: www.biorxiv.org/content/10.1... 🔬 About the study We present the first comprehensive benchmark of bioinformatics tools 👇

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GenomiqueENS @genomiqueens.bsky.social · 12/06/2025

🎉 Our core facility has just renewed its certifications ISO 9001 and NFX-50-900 ! These certifications are particularly important with regards to our users, but also as we are member of @fr-genomics.bsky.social.

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GenomiqueENS @genomiqueens.bsky.social · 19/03/2025

For our 1st post on Bluesky, we are excited to announce the publication of our new #bioinformatics tool #Asarusim for #SingleCellRNAseq coupled with @nanoporetech.com sequencing ! 🎉 🎊 👉 article : academic.oup.com/bioinformati... 👉 GitHub : github.com/GenomiqueENS... cc @fr-genomics.bsky.social

academic.oup.com

AsaruSim: a single-cell and spatial RNA-Seq Nanopore long-reads simulation workflow

AbstractMotivation. The combination of long-read sequencing technologies like Oxford Nanopore with single-cell RNA sequencing (scRNAseq) assays enables the

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