Sign in

Florian Barkmann

@flobarkmann.bsky.social
46 followers 119 following 6 posts

PhD student at Boeva Lab, @ETH_en | Mostly working on ML applied to cancer research | Previously @DKFZ, DKRZ, HKU and university of Tübingen

PostsRepliesMedia
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024
All of this, while CancerFoundation is trained on much less data and the model is significantly smaller.
100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024
The gene embedding learned by CancerFoundation shows grouping of genes by previously discovered Meta-programs.
100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024
CancerFoundation's zero-short cell embeddings resemble known transcriptional states established transcriptional states observed in glioblastoma (GBM) and lung adenocarcinoma (LUAD).
100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024
CancerFoundation outperformed scFoundation and DeepCDR on drug response prediction.
100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024
📢If you are interested in single-cell foundation models (scFMs), stop by our poster (West 109) at the AiDrugX Workshop at Neurips 2024. We will present CancerFoundation, a scFM tailored for studying cancer biology🧬. Preprint: biorxiv.org/content/10.1...
182