Florian Barkmann @flobarkmann.bsky.social · 15/12/2024All of this, while CancerFoundation is trained on much less data and the model is significantly smaller. 100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024The gene embedding learned by CancerFoundation shows grouping of genes by previously discovered Meta-programs. 100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024CancerFoundation's zero-short cell embeddings resemble known transcriptional states established transcriptional states observed in glioblastoma (GBM) and lung adenocarcinoma (LUAD). 100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024CancerFoundation outperformed scFoundation and DeepCDR on drug response prediction. 100
Florian Barkmann @flobarkmann.bsky.social · 15/12/2024📢If you are interested in single-cell foundation models (scFMs), stop by our poster (West 109) at the AiDrugX Workshop at Neurips 2024. We will present CancerFoundation, a scFM tailored for studying cancer biology🧬. Preprint: biorxiv.org/content/10.1... 182