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Fer Cofas

@fcofas.bsky.social
43 followers 92 following 1 posts

Assistant professor at IPPT PAN and PomaLab researcher, specializing in molecular recognition using coarse-grained MD and GōMartini to study protein-protein nanomechanics.

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Reposted by Fer Cofas
Adolfo Poma @apoma.bsky.social · 29/09/2025
🚨 Preprint! Our work complements affinity studies for antibodies (Ab) design 🔹 Mechano­stability as design criterion for Abs against viral escape. 🔹 Two-chain topology: H chain bears force, L chain reinforces via inter-chain contacts. Great work by @fcofas.bsky.social www.biorxiv.org/cgi/content/...
biorxiv.org
A Comparative Nanomechanical Study of Antibody and Nanobody Binding to SARS-CoV-2 Variants
The receptor-binding domain of the SARS-CoV-2 spike protein is the principal target of neutralizing antibodies (Abs) and nanobodies (Nbs). Although their thermodynamic binding properties have been ext...
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Reposted by Fer Cofas
Siewert-Jan Marrink @cg-martini.bsky.social · 30/04/2025
GoGoGoGoGoGoGoMartini3 now finally published ! www.nature.com/articles/s41...
nature.com
GōMartini 3: From large conformational changes in proteins to environmental bias corrections - Nature Communications
This work presents GōMartini 3, an improved coarse-grained protein model combining physics- and structure-based approaches. It boosts computational efficiency and accuracy for structured soluble and m...
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Reposted by Fer Cofas
Siewert-Jan Marrink @cg-martini.bsky.social · 26/03/2025
MartiniGlass: a Tool for Enabling Visualization of Coarse-Grained Martini Topologies | Journal of Chemical Information and Modeling pubs.acs.org/doi/10.1021/...
pubs.acs.org
MartiniGlass: a Tool for Enabling Visualization of Coarse-Grained Martini Topologies
As molecular modeling gains ever more prominence in understanding cellular processes, high quality visualization of models and dynamics has never been more important. Naturally, much molecular visuali...
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Fer Cofas @fcofas.bsky.social · 25/11/2024
#compchem scholargoggler.com
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