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Ewa Szczurek

@ewaszczurek.bsky.social
51 followers 14 following 45 posts
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Ewa Szczurek @ewaszczurek.bsky.social · 13/07/2026
Diogo Soares presenting his poster at @icmlconf, South Korea :) In “Scalable and Interpretable Representation Alignment with Ordinal Similarity”, we contribute new alignment measures, Triplet Similarity Index (TSI) and Quadruplet Similarity Index (QSI). Read the paper here: arxiv.org/abs/2606.16379
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Ewa Szczurek @ewaszczurek.bsky.social · 09/07/2026
Great scenes at ICML, Korea :) Marcin Możejko and Adam Bielecki presenting “PepCompass: Navigating peptide embedding spaces using Riemannian Geometry”, a geometry-based toolkit for geodesics and potential based interpolation, local enumeration strategies and an AMP optimization algorithm.
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Ewa Szczurek @ewaszczurek.bsky.social · 30/06/2026
ICML 2026 kicks off next week and our lab is bringing two papers to share. Quick thread on both 🧵
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Ewa Szczurek @ewaszczurek.bsky.social · 15/06/2026
Our lab had an amazing time at #HAICON26! With talks by Pankhil Gawade, Malgorzata Lazecka and Wojciech Zarzecki plus multiple posters by many of our students and postdocs :). Thank you to the organising team!
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Ewa Szczurek @ewaszczurek.bsky.social · 15/05/2026
Our work on peptides mentioned in Nature! Peptides can contribute to fight drug resistant bacteria. To learn more, have a look at this piece by Katherine Bourzac. I had the pleasure of talking to Katherine and contribute some of our insights to her outlook :) www.nature.com/articles/d41...
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Ewa Szczurek @ewaszczurek.bsky.social · 15/05/2026
Yesterday, I was giving a talk at #EACR 2026! I spoke about our models for imaging mass cytometry data modeling (spatial proteomics data) and applications for tumor microenvironment analysis. Work let by Marcin Możejko, Dawid Uchal and Krzysztof Gogolewski
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Ewa Szczurek @ewaszczurek.bsky.social · 02/04/2026
🧵 1/ Announcing AMP Challenge! AMR is one of the biggest challenges in medicine, and antimicrobial peptides (AMPs) are a promising way to fight back. If you build AI models for biological sequences, AMP Challenge gives you a test: selected peptides will be synthesized and tested for free. 🧬🚀
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Ewa Szczurek @ewaszczurek.bsky.social · 20/03/2026
Our lab has a brand new website! Visit us at ewaszczureklab.mimuw.edu.pl to learn about our research, team, jobs, news, contacts, software and publications :)
ewaszczureklab.mimuw.edu.pl
Szczurek Lab | Computational Biology Research
Ewa Szczurek lab Core AI. Real-world Impact in Peptide Design & Oncology.
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Ewa Szczurek @ewaszczurek.bsky.social · 31/01/2026
📄 Our new paper: "Synergistic Benefits of Joint Molecule Generation and Property Prediction" has been published in TMLR! We propose Hyformer, a transformer with shared parameters and alternating causal / bidirectional attention that handles molecule generation and property prediction jointly.
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Ewa Szczurek @ewaszczurek.bsky.social · 10/01/2026
Last-minute call for applications! 🚨 🔹 Principal Investigator (PI) positions in Health AI 🗓 Deadline: January 11 👉 jobs.helmholtz-muenchen.de/jobposting/8... 🔹 Clinical Consultants (bridging clinical practice & AI innovation) 🗓 Deadline: January 11 👉 jobs.helmholtz-muenchen.de/jobposting/c...
jobs.helmholtz-muenchen.de
Principal Investigators (f/m/x) for (i) AI in Biomedicine and (ii) AI Foundations
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Ewa Szczurek @ewaszczurek.bsky.social · 03/01/2026
New preprint: Cross-View Latent Integration via Nonparametric Gamma Shrinkage Factor Analysis. We introduce a fully Bayesian, unsupervised multi-view factor model that automatically learns the number of factors, handles heterogeneous noise, and yields sparse, interpretable loadings.
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Reposted by Ewa Szczurek
David Posada @davidposada.bsky.social · 08/09/2025
🚀 Excited to share our latest collaboration with Ewa Szczurek’s lab (@ewaszczurek.bsky.social) et al. in Genome Biology! 🧬 DelSIEVE: single-cell phylogeny from SNVs & indels 🧬 👉 rdcu.be/eCnL3 Big thanks to Senbai and Ewa for leading this project, and to all collaborators who made it possible! 🙌
rdcu.be
DelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing data
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Reposted by Ewa Szczurek
Mathieu Seyfrid @mathieuseyfrid.bsky.social · 22/05/2025
First of two stays completed ! @bayfor.org @www.helmholtz-munich.de www.linkedin.com/posts/mathie...
linkedin.com
Thankful to BayFOR and the BayIntAn international cooperation programme to… | Mathieu Seyfrid, PhD
Thankful to BayFOR and the BayIntAn international cooperation programme to fund the stay of Dinesh Adhithya Haridoss from Ewa Szczurek's group at Northwestern University - The Feinberg School of ...
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Ewa Szczurek @ewaszczurek.bsky.social · 18/06/2025
Last days to register! Come and join us at the Symposium!
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Ewa Szczurek @ewaszczurek.bsky.social · 02/05/2025
If you have not done so yet, send your abstract today to the Helmholtz Munich AI for Health Symposium 2025 on Generative AI in Molecule Discovery! events.hifis.net/event/2015/
events.hifis.net
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Ewa Szczurek @ewaszczurek.bsky.social · 29/04/2025
Thrilled to share new paper on FACTM, our Factor Analysis with Correlated Topic Model for Multi-Modal Data, accepted at AISTATS, 2025! arxiv.org/pdf/2504.18914 if you are at the conference, come to talk to Malgorzata Lazecka at her poster!
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Ewa Szczurek @ewaszczurek.bsky.social · 25/04/2025
I will be chairing and presenting at the ED45 - How to Measure Cancer Evolution session at @AACR25 today. We've got great speakers, @nlbigas.bsky.social and @jeffreytownsend.bsky.social :) Come and attend the session if you are there! Would love to connect.
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Ewa Szczurek @ewaszczurek.bsky.social · 07/04/2025
Save the date for the Helmholtz Munich AI for Health Symposium 2025, devoted to the topic of Generative AI in Molecule Discovery! July 4, 2025 Helmholtz Munich Campus in Neuherberg, Germany What now? Register and submit abstracts (deadline May 2, 2025!) events.hifis.net/event/2015/r...
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Ewa Szczurek @ewaszczurek.bsky.social · 28/03/2025
Two PhD positions in our lab at the University of Warsaw! We are looking for computer scientists, mathematicians or physicists, with experience in ML and AI, to join our team!
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Ewa Szczurek @ewaszczurek.bsky.social · 12/03/2025
Postdoc positions in our lab at Helmholtz Munich: jobs.helmholtz-muenchen.de/jobposting/9... Wonderful opportunities to develop novel AI methods with applications in computational biology and medicine! Please share or apply :)
jobs.helmholtz-muenchen.de
Postdoc in Artificial Intelligence for Oncology and Molecule Discovery (f/m/x)
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Ewa Szczurek @ewaszczurek.bsky.social · 25/02/2025
At the Antimicrobial peptides GRC Conference in beautiful Ventura, California. Thanks to Delphine Destoumieux-Garzón and Gerard Wood for the invitation and the opportunity to talk about Generative AI for antimicrobial peptide discovery! With @szymczakpau.bsky.social, her poster and amazing sunset:)
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Ewa Szczurek @ewaszczurek.bsky.social · 05/12/2024
Very proud to share that Kazik Oksza-Orzechowski, a PhD candidate in our lab was awarded the NCN National Science Centre Preludium grant for his Cell-MAGIC project! Kazik will attempt to infer clonal structure and genotypes of follicular lymphoma cells from scRNA-seq and scBCR-seq data.
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