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Dimos Karamanlis

@dimokaramanlis.neuromatch.social.ap.brid.gy

Neuroscientist postdoc. Interested in neural coding, cell types, and decision-making. Currently based at UNIGE (Department of Basic Neurosciences). 🌉 bridged from ⁂ neuromatch.social/@dimokaramanlis, follow @ap.brid.gy to interact

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Dimos Karamanlis @dimokaramanlis.neuromatch.social.ap.brid.gy · 15/10/2026

LightSuite is free and open source. Try it on your own data! 🛠️ MATLAB: github.com/dimokaramanlis/LightSuite Python: under development Issues, PRs, and "it broke on my dataset" reports are all very welcome. Boosts are much appreciated 4/4 #OpenSource #BrainAtlas

github.com

GitHub - dimokaramanlis/LightSuite: Scalable atlas registration and cell detection across the central nervous system

Scalable atlas registration and cell detection across the central nervous system - dimokaramanlis/LightSuite

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Dimos Karamanlis @dimokaramanlis.neuromatch.social.ap.brid.gy · 15/10/2026

And the spinal cord, too! 🦴 Here's a sweep from C1 to S4 through a sample (eGFP myelin), with atlas boundaries overlaid and the current segment marked on the strip below.

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Dimos Karamanlis @dimokaramanlis.neuromatch.social.ap.brid.gy · 15/10/2026

The registration pipeline was built for light-sheet brains, but with some modifications it also worked very well for other modalities: serial slices and functional ultrasound (fUS). Here are all three in the Allen CCF, swept front to back: 🔴 light-sheet […] [Original post on neuromatch.social]

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Dimos Karamanlis @dimokaramanlis.neuromatch.social.ap.brid.gy · 15/10/2026

Whole-brain light-sheet imaging has gone from a specialist method to a routine one, and the datasets keep growing. So I built LightSuite to keep up: cell detection and Allen CCF registration for whole mouse brains. Below: from single tdTomato+ […] [Original post on neuromatch.social]

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