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Justin Conover

@conjustover.bsky.social
1.2K followers 1.8K following 59 posts

Assistant Member and Principal Investigator Donald Danforth Plant Science Center, St. Louis MO Interested in plants, popgen, polyploidy, and puns.

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Justin Conover @conjustover.bsky.social · 25/06/2026
By far, the best acknowledgements slide I saw at Evolution this year came from @swsschaeffer.bsky.social, professor emeritus at Penn State University. “Thank you to Penn State for still giving me an office space. And I thank Social Security for my salary support.”
Stephen Schaeffer, professor emeritus at Penn State, stands at a podium to the right during a talk at the Evolution Conference. On the left, a slide is shown with a list of acknowledgements, including “Funding: Social Security Administration.”
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Kyle T David @kylethedavid.bsky.social · 21/06/2026
@conjustover.bsky.social explaining why all polyploid researchers are masochists at #Evol2026
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Joel Sharbrough @jsharbro.bsky.social · 03/11/2025
I am looking for a PhD student to start in my lab at UCSB in Fall 2026, studying evolutionary biology. See attached flyer for more information. Please also share with potentially interested students. Thanks!
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Justin Conover @conjustover.bsky.social · 02/09/2025
New Preprint! This one led by Sam Gibbon, an outstanding undergrad I've worked with for the past year. We take a look at whether segregation patterns in tetraploids (disomic v polysomic) affects mut-sel dynamics. We found some surprising results, and some subtleties: www.biorxiv.org/content/10.1...
biorxiv.org
Bistable Mutation-Selection Equilibria and Violations of Fisher's Theorem in Tetraploids: Insights from Nonlinear Dynamics
Polyploidy and whole genome duplication (WGD) are widespread biological phenomena with substantial cellular, meiotic, and genetic effects. Despite their prevalence and significance across the tree of ...
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Justin Conover @conjustover.bsky.social · 13/08/2025
New Paper! In 2019, my first dissertation chapter revealed complicated polyploidies in the cotton family (Malvaceae) but we lacked the tools and genomes to truly understand it. Now with better genomes and improved methods, it's much more complicated than we thought. www.nature.com/articles/s41...
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Ryan Gutenkunst @ryangutenkunst.bsky.social · 05/08/2025
If you're new to demographic history inference from population genomics, try this webapp I created to illustrate how dadi fits bottleneck models to site frequency spectra: ryangutenkunst-dadi-two-epoch.hf.space . It even outputs files for submitting to the GHIST competition! ghi.st
Logo for the Genomic History Inference Strategies Tournament.
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Justin Conover @conjustover.bsky.social · 01/07/2025
The Conover Lab is open! I am so excited to join a group of talented, caring, and creative folks at the @danforthcenter.bsky.social, all in service of improving the human condition through plant science.
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Justin Conover @conjustover.bsky.social · 01/05/2025
Thanks for everything, Tucson! I arrived in St. Louis today, and am incredibly excited to see what this city has in store for me. Only one month until the Conover Lab officially opens at the Donald Danforth Plant Science Center!
Shadowy silhouettes of several tall saguaro cacti, backlit by a beautiful Arizona sunset. The sky is painted with oranges and yellows, juxtaposed against the Sonoran desert flora.
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Nature Plants @natplants.nature.com · 23/04/2025
New Article: "Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls" rdcu.be/eiWNF Fern transcriptomes reveal repeated whole-genome duplications, unique gene families and distinct lignocellulosic evolution... #PlantScience
Many ferns images from the paper.
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Nature @nature.com · 23/04/2025
Researchers pinpoint the genes responsible for the final three pea traits studied by Gregor Mendel more than 160 years ago go.nature.com/3EC3eqT
go.nature.com
Century-old genetics mystery of Mendel’s peas finally solved
Researchers pinpoint the genes responsible for the final three pea traits studied by the famed citizen scientist.
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Bethany Brookshire @beebrookshire.bsky.social · 01/04/2025
The tragic irony of nearly 2000 scientists, members of the National Academies, coming together to write a letter condemning the attacks on science: docs.google.com/document/d/1... www.nytimes.com/2025/03/31/s... And then today: Mass cuts to federal health www.nytimes.com/live/2025/04...
docs.google.com
Public Statement on Supporting Science for the Benefit of All Citizens
TO THE AMERICAN PEOPLE We all rely on science. Science gave us the smartphones in our pockets, the navigation systems in our cars, and life-saving medical care. We count on engineers when we drive acr...
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Ryan Gutenkunst @ryangutenkunst.bsky.social · 28/03/2025
Brilliant idea from a colleague. We need the NCAA to advocate on behalf of higher ed in America, b/c they can reach people suspicious of "elites" in higher ed. Imagine March Madness ending with a message about how admin is threaten unis and thus college sports... Any ideas how to make this happen?
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Donald Danforth Plant Science Center @danforthcenter.bsky.social · 18/02/2025
After an extensive search, the Danforth Center has named Giles Oldroyd, PhD, its next President. @gilesoldroyd.bsky.social is a renowned plant geneticist & one of only a few hundred scientists elected to both the UK @royalsociety.org & the US @nasonline.org. www.danforthcenter.org/news/interna...
danforthcenter.org
Internationally recognized plant scientist named next President of the Danforth Plant Science Center - Danforth Plant Science Center
After an extensive international search, the Donald Danforth Plant Science Center has named Giles Oldroyd, PhD, as its next President.
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Ryan Gutenkunst @ryangutenkunst.bsky.social · 24/01/2025
Our paper on fitting population genetic models to low-pass sequencing data is now out in Molecular Biology and Evolution! doi.org/10.1093/molb...
Comparison of allele frequency spectra for 3x coverage, with and without our bias model.
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David Castellano @castellanoed.bsky.social · 09/01/2025
Short thread on my updated work with @gutengroup.mcb.arizona.edu "Detection of Domestication Signals through the Analysis of the Full Distribution of Fitness Effects", latest version at: www.biorxiv.org/content/10.1... Here we simulate a kind of canonical and idealised domestication process.
biorxiv.org
Detection of Domestication Signals through the Analysis of the Full Distribution of Fitness Effects
Domestication is a process marked by complex interactions between demographic changes and selective pressures, which together shape genetic diversity. While the phenotypic outcomes of domestication ar...
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Justin Conover @conjustover.bsky.social · 07/01/2025
First statistical test of the year was p=0.053. It's going to be a good year.
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Dan Sloan @sloanevolab.bsky.social · 18/12/2024
Second paper from the lab out today (woohoo!). This one led by Rachael DeTar. Check out what happens to mito+plastid translation machinery in plants that have lost photosynthesis! Published in @pnas.org: www.pnas.org/doi/10.1073/... Also available on bioRxiv: www.biorxiv.org/content/10.1...
Fluorescence microscopy of plant leaf cells showing mitochondrial and chloroplast targeting of proteins.
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Shelly Gaynor @shellygaynor.bsky.social · 18/12/2024
If you happen to be interested in the coexistence of diploids and tetraploids given modern coexistence theory and stochastic population dynamics - Check out our #JustAccepted paper at @asn-amnat.bsky.social doi.org/10.1086/734411
doi.org
Dynamics of mixed-ploidy populations under demographic and environmental stochasticities | The American Naturalist: Vol 0, No ja
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Joanna Masel @joannamasel.bsky.social · 12/12/2024
We identified protein domains in LUCA (Last Universal Common Ancestor). Their distinctive amino acid usage reveals the order amino acids were added to the genetic code, based mostly on size. Older proteins hint at earlier alternative codes. 1/15 @seekingluca.bsky.social www.pnas.org/doi/10.1073/...
pnas.org
Order of amino acid recruitment into the genetic code resolved by last universal common ancestor’s protein domains | PNAS
The current “consensus” order in which amino acids were added to the genetic code is based on potentially biased criteria, such as the absence of s...
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Will Booker @wbooker.bsky.social · 06/12/2024
Final version of this out now in that beautiful Amnat typesetting! www.journals.uchicago.edu/doi/10.1086/...
journals.uchicago.edu
The Genetic Consequences of Range Expansion and Its Influence on Diploidization in Polyploids | The American Naturalist
Abstract Despite newly formed polyploids being subjected to myriad fitness consequences, the relative prevalence of polyploidy, both contemporarily and in ancestral branches of the tree of life, sugge...
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 03/12/2024
another new preprint from the lab! Regina Fairbanks tackles the popgen of teosinte glume architecture 1 www.biorxiv.org/content/10.1.... A 🧵
biorxiv.org
An ancient origin of the naked grains of maize
Adaptation to novel environments requires genetic variation, which may either predate the novel environment or arise as new mutations. The relative importance of standing genetic variation vs. de novo...
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 03/12/2024
new preprint from the lab! Elli Cryan, coadvised but the inimitable @spicybotrytis.bsky.social, does a deep dive into the GA incompatibility loci in maize, finding complex haplotypes, overturning evolutionary origins, and discovering a paramutation system! A 🧵 www.biorxiv.org/content/10.1...
biorxiv.org
Molecular evolution of a reproductive barrier in maize and related species
Three cross-incompatibility loci each control a distinct reproductive barrier in domesticated maize ( Zea mays ssp. mays ) and its wild teosinte relatives. These three loci, Teosinte crossing barrier ...
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Michael Landis @landismj.bsky.social · 03/12/2024
Here's the second starter pack of Early Career Evolutionary Biologists: go.bsky.app/j5DX3f Link to first starter pack: go.bsky.app/MzND7nX Follow these inspirational folks to support the next generation of evolutionary biologists #evobio Out of time for now! Will add more names this weekend
Screen shot of starter pack image
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Michael Landis @landismj.bsky.social · 19/11/2024
Here's a starter pack for early career researchers in evolutionary biology. I prioritized the most-junior folks, and this list quickly filled up with undergrads, grad students, and postdocs. Might do another list later, but I'm tired. Have fun everyone! 🐒 #evobio go.bsky.app/MzND7nX
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Mike Barker @barkerms.bsky.social · 29/11/2024
We had a wonderful 2024 #Plantsgiving with @conjustover.bsky.social, @aast242.bsky.social, @skang.bsky.social, and @poppybot.bsky.social among others! Our final count for this year's dinner was 103 species from 42 families! docs.google.com/spreadsheets...
docs.google.com
Barker/Dlugosch Plantsgiving 2024 Public List
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Chris Martine | Plant People FTW @martinebotany.bsky.social · 21/11/2024
Okay, gang. Are we ready for a little Bluesky #PlantsGiving action? A social media tradition since 2018: counting & reporting out the number of plant species consumed during your Thursday dinner. I've got a class doing it for homework. Excited to see what they share. #iamabotanist #bisonflowers
Twitter post from last year reporting 72 species consumed. Photo is pumpkin pie and blueberry pie .. a la mode.
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Julia Evans @b0rk.jvns.ca · 21/11/2024
working on this unix redirects diagram today
a bunch of diagrams showing how stdin/stdout/stderr work for various combinations of >, < , |
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Theo Sanderson @theo.io · 12/11/2024
My app for finding 🦋 accounts you may want to follow has had a make-over: it now displays names and bios, and allows adding an "app password" for direct follow buttons in the listing bsky-follow-finder.theo.io
bsky-follow-finder.theo.io
Bluesky Network Analyzer
Find accounts that you don't follow (yet) but are followed by lots of accounts that you do follow.
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Justin Conover @conjustover.bsky.social · 12/11/2024
Since #starterpacks have taken off, I couldn't find a great to way search for them within bluesky. But, you can you search all of the starterpacks here and follow as many as you like! blueskydirectory.com/starter-pack...
blueskydirectory.com
All - Bluesky Directory
A curated collection of all things relating to the Blue Sky social media platform.
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Ryan Gutenkunst @ryangutenkunst.bsky.social · 12/11/2024
The Genomic History Inference Strategies Tournament closes on Nov 15! Analyze genomic data with your favorite demographic inference tool, and see if you can discover the true demography of the population to win the contest (and authorship). More info at ghi.st! Please re-skeet.
GHIST logo
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Mike Barker @barkerms.bsky.social · 12/09/2024
Join us on Wednesday, October 2, at 11AM PDT for the first #PolyploidyWebinar of the season! @shellygaynor.bsky.social and @pairoflogs.bsky.social will lead us off! The zoom link will be emailed out before the talks - sign up here if you have not signed up before! forms.gle/Bp3VUGeP9nAc...
A flyer for the Polyploidy Webinar that will be at 11 AM Pacific Time on October 2, 2024. Shelly Gaynor from the University of Michigan will present "Computationally intensive methods and models to understand mixed-cytotype populations" and Michael McKibben from the University of Arizona will discuss "Species‐tree topology impacts the inference of ancient whole‐genome duplications across the angiosperm phylogeny".
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Justin Conover @conjustover.bsky.social · 27/08/2024
I am ecstatic to share that I have accepted the Assistant Member and Principal Investigator position at the Donald Danforth Plant Science Center in St. Louis, MO! The Conover Lab will open June 1, 2025, and will be broadly interested in polyploid evolutionary genomics.
Justin standing next to a sign of the logo of the Donald Danforth Plant Science Center. In the background is the building of the Danforth Center, which sits within a lush green prairie that surrounds the building.
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Justin Conover @conjustover.bsky.social · 27/08/2024
I am ecstatic to share that I have accepted the Assistant Member and Principal Investigator position at the Donald Danforth Plant Science Center in St. Louis, MO! The Conover Lab will open June 1, 2025, and will be broadly interested in polyploid evolutionary genomics.
Justin standing next to a sign of the logo of the Donald Danforth Plant Science Center. In the background is the building of the Danforth Center, which sits within a lush green prairie that surrounds the building.
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Shelly Gaynor @shellygaynor.bsky.social · 13/02/2024
Half a million models + many duck jokes later, I'm excited to share the preprint for nQuack: biorxiv.org/content/10.1... This project started as a paragraph in a paper with @jlandisbotany.bsky.social, Rob Laport, and Tim O'Connor But morphed into a new method and package. (1/n)
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Justin Conover @conjustover.bsky.social · 07/02/2024
Also heads up, this change was implemented in GATK v4.2.3, which came out THREE YEARS AGO. All of the data I generated in the past year as been impacted by this 😭😭😭
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Joel Sharbrough @jsharbro.bsky.social · 24/01/2024
As the culmination of a five-year project working with Dan Sloan, @jonathanfwendel.bsky.social, @conjustover.bsky.social, and Corrinne Grover, we’re super excited to put out this mini-review, summarizing the work we (and many others) have done over the past few years. Check it out if you have time!
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Jonathan Wendel @jonathanfwendel.bsky.social · 13/11/2023
Our perspective piece on the cytonuclear dimension of polyploid evolution in plants doi.org/10.32942/X2V...
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Justin Conover @conjustover.bsky.social · 13/11/2023
New preprint! It turns out that analyzing polyploid genomes is difficult. One reason why is because duplicated chromosomes (homoeologs) can physically interact and recombine during meiosis, creating mosaic chromosomal. But how do you identify these regions? www.biorxiv.org/content/10.1...
biorxiv.org
Little Evidence for Homoeologous Gene Conversion and Homoeologous Exchange Events in Gossypium Allop...
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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