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CompGenLabUB @compgenlabub.bsky.social · 23/10/2024

The pipeline stands out as a reproducible, user-friendly and adjustable automated protocol that allows user-friendly TES oriented analyses for virome study. Visit our GitHub page for more details: t.co/4bTXIhknAT 🧵6/6

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CompGenLabUB @compgenlabub.bsky.social · 23/10/2024

The targeted viral species and similar sequences were notably enriched when compared to non targeted viral species. 🧵5/6 t.co/1BLxCCHI4e

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CompGenLabUB @compgenlabub.bsky.social · 23/10/2024

CAPTVRED got higher Precision, Recall & F-1 stats, compared to other automated pipelines, in synthetic datasets. It was used to assess performance of a capture panel too, resulting in an enrichment of the viral fraction & reduction of other fractions of non-interest.🧵4/6

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CompGenLabUB @compgenlabub.bsky.social · 23/10/2024

This work presents a downstream bioinformatics analysis that complements and enhances the performance of this experimental approach. The pipeline includes a setup module that subsets and adapts the database together with the targeted viral species sequences. 🧵2/6

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CompGenLabUB @compgenlabub.bsky.social · 23/10/2024

Happy to share our latest publication in viral metagenomics. t.co/vLcRYe9yeZ CAPTVRED is an automated pipeline oriented to Viral Target Enrichment Sequencing. TES strategy is becoming increasingly popular for virome analyses, especially in environmental samples. 🧵1/6 t.co/nAwDGrGX2X

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

#EMPB2024 Junior Scientist Comunication awards: 𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session B) Poster B06 Leung, Casey University of Toronto "Reconstruction of positional information during homeostasis & regeneration from spatial transcriptomics of S. mediterranea".

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

#EMPB2024 Junior Scientist Comunication awards: 𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session A) Poster A04 Dreier, Fabienne MPI-NAT "In-situ Hybridization Chain Reaction (HCR) optimization in S. mediterranea – simplifying multi color FISH in planaria".

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

#EMPB2024 Junior Scientist Comunication awards: 𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸 Gaurav Vaidya EMBL-Heidelberg "Let’s talk about sex: Mechanisms of reproductive switching in planarian flatworms".

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

#EMPB2024 Junior Scientist Comunication awards: 𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸 Alberto Perez-Posada University of Exeter "The regulatory logic of Planarian stem cell differentiation".

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

Farewell to all #EMPB2024 participants, we are looking forward to meet you all on the next edition of the European Meeting on Planarian Biology!

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

Announcing the #EMPB2024 winners of the best junior scientist talks and best poster presentations. t.co/Gl8saxnzmX

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

Last #EMPB2024 session was a round table for an open discussion on new technologies that will be useful for the planarian community. t.co/QN4rhedGxL

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

Invited online talk via Zoom by Oded Rechavi (Tel-Aviv University) at #EMPB2024. t.co/iPV2l5pW7F

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CompGenLabUB @compgenlabub.bsky.social · 15/10/2024

Another interesting #EMPB2024 talks session on "Planarian Cell Biology", chaired by Prasad Abnave (NCCS-Savitribai Phule Pune University). t.co/ChdDkXFwNB

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CompGenLabUB @compgenlabub.bsky.social · 14/10/2024

Other flatworn species were welcome on the "Beyond Schmidtea mediterranea" #EMPB2024 talks session chaired by Claus Kuhn (University of Bayreuth). t.co/bDNtl08ZDX

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CompGenLabUB @compgenlabub.bsky.social · 14/10/2024

Talks retaking "Regeneration & Stem Cells" tòpic on the third session of #EMPB2024 chaired by Hanh Vu (EMBL-Heidelberg). t.co/8U0y6YiJGX

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CompGenLabUB @compgenlabub.bsky.social · 14/10/2024

People enjoying the morning #EMPB2024 posters session! t.co/gifHRBRT9D

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CompGenLabUB @compgenlabub.bsky.social · 14/10/2024

Starting session II "Immune & Toxin Responses", chaired by Karen Smeets (Hasselt University), at #EMPB2024 t.co/CinmtZPRQ6

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CompGenLabUB @compgenlabub.bsky.social · 13/10/2024

Omri Wurtzel (Tel-Aviv University) chairing #EMPB2024 first talks session on "Stem Cells & Regeneration" t.co/Vl26cPhyW7

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CompGenLabUB @compgenlabub.bsky.social · 13/10/2024

Bo Wang (Stanford University) invited talk opening the #EMPB2024 meeting t.co/jPmAVntXrz

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CompGenLabUB @compgenlabub.bsky.social · 13/10/2024

6th European Meeting on Planarian Biology #EMPB2024 is about to start. Welcome all participants! t.co/Pc5yqT0ss0

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CompGenLabUB @compgenlabub.bsky.social · 12/10/2024

#EMPB2024 Abstracts Book is already available from the meeting web page, here you can find a direct link to the PDF t.co/X4PKluoIzW t.co/W2pn1rtMJk

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CompGenLabUB @compgenlabub.bsky.social · 27/09/2024

We are happy to announce that a preliminary program and venue information for #EMPB2024 is already available on the meeting website (t.co/FSbSzd8VF1) Further details about the talks coming soon!

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CompGenLabUB @compgenlabub.bsky.social · 12/09/2024

We celebrate today Marcel Nos' great defense for his BSc in Biology thesis (#TFG2024) @BiologiaUB @GeneticsUB @CompGenLabUB t.co/ZuOZ71Reyk

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CompGenLabUB @compgenlabub.bsky.social · 18/06/2024

We are happy to announce that registration is already open for this year European Meeting on Planarian Biology (#EMPB2024), taking place in Platja d'Aro, Oct 13-15th. Further info at t.co/FSbSzd8VF1 t.co/ifZ6yCns66

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CompGenLabUB @compgenlabub.bsky.social · 06/10/2023

We were pleased to introduce @CompGenLabUB main research lines on the elevator pitch talks session for @IBUB_UB Research Day 2023. #IBUB_ResearchDay2023 t.co/Pj4Y82jzSs

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CompGenLabUB @compgenlabub.bsky.social · 13/09/2023

We celebrate today the great defense of Marta García Nieto (@torisbajo) for her BSc in Biomedical Sciences thesis (#TFG2023) @BiologiaUB @GeneticsUB @LabViruses @CompGenLabUB t.co/L7LlKPvNqp

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CompGenLabUB @compgenlabub.bsky.social · 04/07/2023

We are proud of @TaalMaria97, defending her Master Project about Captvred pipeline for the @UPFBarcelona MSc of Bioinformatics for Health Sciences. #captvred @LabViruses @CompGenLabUB t.co/5h9zEIY1FD

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CompGenLabUB @compgenlabub.bsky.social · 06/10/2022

#EMPB2022 Junior Scientist Comunication awards: 𝗦𝗲𝗰𝗼𝗻𝗱 𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 Maria Rosselló [Universitat de Barcelona] Poster #14 - “Improving planarian transcriptomic data using Oxford Nanopore Technologies sequencing techniques.”

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CompGenLabUB @compgenlabub.bsky.social · 06/10/2022

#EMPB2022 Junior Scientist Comunication awards: 𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 Jun-Ru Lee [Max Planck Institute of Multidisciplinary Sciences] Poster #8 - “The cellular bases of tissue turnover in the planarian epidermis.”

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CompGenLabUB @compgenlabub.bsky.social · 06/10/2022

#EMPB2022 Junior Scientist Comunication awards: 𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸 Yarden Yesharim [Tel Aviv University] “m6A is required for resolving progenitor identity during planarian stem cell differentiation.”

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CompGenLabUB @compgenlabub.bsky.social · 04/10/2022

Congrats @_mariarx for winning the best poster second prize...🥳

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CompGenLabUB @compgenlabub.bsky.social · 04/10/2022

Marta Riutort enlightening us on Dugesia genus evolutionary history at #EMPB2022. t.co/e0g0srZFbA

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CompGenLabUB @compgenlabub.bsky.social · 03/10/2022

Group foto with all the attendants at #EMPB2022, having a great time and talking about planarians... t.co/wHV2BmN5qh

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CompGenLabUB @compgenlabub.bsky.social · 03/10/2022

Nice posters on the second poster session this evening at #EMPB2022 t.co/u8BVPfRoRd

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CompGenLabUB @compgenlabub.bsky.social · 03/10/2022

Present your poster session in one minute before starting the second posters session at #EMPB2022. t.co/tnR6WABbuw

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CompGenLabUB @compgenlabub.bsky.social · 03/10/2022

Talking about PlanNET & PlanEXP t.co/p5uqbBPkZq, at the Omics session of #EMPB2022. t.co/Lq1njmf7qa

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CompGenLabUB @compgenlabub.bsky.social · 03/10/2022

Starting 2nd day of great talks at #EMPB2022 with Carrie Adler keynote lecture on rescue of planarian regeneration after lethal radiation. t.co/wUYUR9jOU4

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CompGenLabUB @compgenlabub.bsky.social · 02/10/2022

Many interesting contributions on first poster session at #EMPB2022 t.co/2d1B2sZV8L

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CompGenLabUB @compgenlabub.bsky.social · 02/10/2022

Mansi Srivastava keynote talk on animals regeneration and evolution opening #EMPB2022. t.co/wwzC8WsfI3

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CompGenLabUB @compgenlabub.bsky.social · 02/10/2022

#EMPB2022 5th European Meeting on Planarian Biology, held at Sant Feliu de Guíxols, is about to begin. t.co/GUOcR9MnRa

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CompGenLabUB @compgenlabub.bsky.social · 06/04/2022

Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution t.co/Nz8ZpNCWiH

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CompGenLabUB @compgenlabub.bsky.social · 05/04/2022

Mind the gap!!! A new Genomics milestone: The complete sequence of a human genome published by T2T Consortium t.co/0ekoLS9ohN

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