Sign in

Chive

@chive.pub
225 followers 63 following 55 posts

Decentralized eprints with ATProto. chive.pub

PostsRepliesMedia
Chive @chive.pub · 09/09/2026
Re: bioRxiv, do you just mean an indexed import source? If so, there are some challenges with the way the bioRxiv API is set up, but we can look into workarounds if there’s interest. A simple “enter the DOI to get started” should be straightforward, it’s automated import suggestions that are harder.
010
Chive @chive.pub · 09/09/2026
That post is talking specifically about layers.pub datasets, which are collections of ATProto records. Papers can point to DOIs (inside the publishedVersion field). We don’t mint DOIs however, so they need to come from some other source.
111
Chive @chive.pub · 08/09/2026
Finally, papers on chive.pub now show which other papers cite them, as a graph you can move around in. We extract references from each PDF with grobid (github.com/grobidOrg/grobid) and match them against what's indexed.
An example of the chive citation graph visualizer.An example of a citation tab.
020
Chive @chive.pub · 08/09/2026
Submitting an eprint can also optionally record it on your @sifa.id profile in the same step, so you don't have to enter a paper twice.
110
Chive @chive.pub · 08/09/2026
Chive now reads your @sifa.id profile if you have one and populates your public profile with current and previous affiliations automatically.
An example of a profile populated by metadata from sifa.id.
110
Chive @chive.pub · 08/09/2026
Relatedly, check out @layers.pub's recent announcement about the repo.layers.pub data PDS and lairs (layers.pub/lairs) toolkit.
100
Chive @chive.pub · 08/09/2026
You can also point a paper at a @layers.pub dataset it introduces or uses. A dataset is named by at-uri rather than by a URL at some host, so the reference is to the record and doesn't depend on a particular page staying up.
A data tab for a paper showing a layers record and python code for downloading the data.
211
Chive @chive.pub · 08/09/2026
@tangled.org repositories can now be referenced by at-uri rather than by URL.
110
Chive @chive.pub · 08/09/2026
You can now post an event with @smokesignal.events or anything else using community.lexicon.calendar.event, list the eprint among its URIs, and the paper shows where it was presented.
100
Chive @chive.pub · 08/09/2026
New eprints publish a site.standard.document record, so @standard.site readers can pick them up. Sharing an eprint to bluesky also records the post on that document, which makes the reply thread findable from the paper.
120
Chive @chive.pub · 08/09/2026
Records from Semble (@cosmik.network) and @margin.at reach chive as well. Adding a paper to a Semble collection, connecting two works, or annotating one on Margin now shows on the paper.
100
Chive @chive.pub · 08/09/2026
@leaflet.pub documents and comments that reference an eprint now show up on it. Chive picks up the reference whether it's an inline link in the prose, a website block, or the subject of a comment.
120
Chive @chive.pub · 08/09/2026
Papers on chive.pub now have an Atmosphere tab, which collects up records elsewhere on the network that refer to it.
An image of a populated Atmosphere tab on a paper.
150
Chive @chive.pub · 08/09/2026
Alongside a bunch of bug fixes, we've got a few new features on chive.pub we're excited about. Most of them involve connecting a paper to other things that relate to it on the Atmosphere and beyond.
chive.pub
Chive | Decentralized Eprint Service
Decentralized eprints on ATProto.
1216
Reposted by Chive
ATProto Science @atproto.science · 28/08/2026
We made a thing! Check out our new #ATScience ecosystem map ✨ All projects, organized in one place: atproto.science/ecosystem/
39832
Reposted by Chive
ATProto Science @atproto.science · 31/07/2026
Great survey of the "scholarly interface design" frontier that also highlights the emerging role of the atproto.science and modular research ecosystems - @chive.pub @paperstarsorg.bsky.social @cosmik.network @semble.so @margin.at @discoursegraphs.bsky.social @curvenote.com and many more!
0182
Reposted by Chive
Cosmik Network @cosmik.network · 14/05/2026
@airglow.run + @continuous.foundation oxa.dev + @discoursegraphs.bsky.social + @scios.tech mira.science + @semble.so connections + ... = modular science revolution 🚀
chive.pub
Chive | Decentralized Eprint Service
Decentralized eprints on ATProto.
1184
Chive @chive.pub · 07/05/2026
We're aware of some auth issues due to our recent migration to permission sets and are working through them. They should be resolved soon!
The authorization screen for chive showing bluesky, chive, standard.site, semble, and margin permission sets.
030
Chive @chive.pub · 30/04/2026
We have lots of fun stuff in the works, including deeper interop with some of @semble.so’s new features. Stay tuned!
0110
Reposted by Chive
Cosmik Network @cosmik.network · 08/04/2026
March updates! @atproto.science and AtmosphereConf, @ronentk.me joined the BiTS accelerator, new Semble features like faceted following and faster card saving, plus exciting community contributions and cross-app integrations with @chive.pub and @skyreader.app Happy Spring 🌻
blog.cosmik.network
Cosmik Updates: March 2026
March was packed: AtmosphereConf and ATScience in Vancouver, Ronen joined the Renaissance Philanthropy BiTS field building accelerator, new Semble features like faceted following and faster card savin...
3237
Reposted by Chive
Layers @layers.pub · 31/03/2026
Layers now has a zulip chat at community.layers.pub! DM if you're interested in joining!
143
Reposted by Chive
Ronen Tamari @ronentk.me · 17/03/2026
Testing @chive.pub <> @semble.so integration 🔥 Interop is the future exhibit #23610 #ATScience
0276
Chive @chive.pub · 11/03/2026
Our final deep dive is on our discovery and citation features.
chive.leaflet.pub
Discovery and citations in Chive - Chive
How Chive extracts citations, enriches metadata from external sources, and surfaces related work through the knowledge graph.
010
Chive @chive.pub · 09/03/2026
Our third deep dive is on our reviewing, annotation, and endorsement features.
chive.leaflet.pub
Reviews, Annotations, and Endorsements in Chive - Chive
Threaded reviews, passage-level annotations, structured endorsements, and entity links on eprints.
100
Reposted by Chive
Aaron Steven White @aaronstevenwhite.io · 07/03/2026
Hey #langsky! Any feedback you might have on these lexicons is appreciated! You can start a discussion at github.com/layers-pub/l.... 🐦🐦
165
Chive @chive.pub · 06/03/2026
In theory, these feeds should even function to follow work associated with particular venues (e.g. conferences or workshops) and institutions. Though, because we don't have any such venues or institutions on Chive yet, that functionality hasn't been stress-tested yet.
000
Chive @chive.pub · 06/03/2026
As noted in the post, there are still some kinks to work out (mainly around interoperability with @semble.so), but the main functionality is there, including feeds that automatically populate with papers, reviews, etc. based on the authors, fields, etc. in the collection.
150
Chive @chive.pub · 06/03/2026
Our second deep dive is on one of our newest features: collections.
chive.leaflet.pub
Collections in Chive - Chive
Structured research collections with live activity feeds, subcollections, and integration with the knowledge graph.
130
Chive @chive.pub · 06/03/2026
We have a way of associating eprints with code repos at the moment, but we welcome any discussion of what a deeper integration with @tangled.org might look like on github.com/chive-pub/ch....
github.com
chive-pub chive · Discussions
Explore the GitHub Discussions forum for chive-pub chive. Discuss code, ask questions & collaborate with the developer community.
030
Chive @chive.pub · 05/03/2026
Sounds great!
010
Chive @chive.pub · 05/03/2026
That would be great! Thank you! A note on the LingBuzz integration: we are limited to new posts on LingBuzz showing up on the RSS feed. We haven’t been able to get the LingBuzz admin to respond on a deeper integration, and the LingBuzz robots.txt is very restrictive.
120
Chive @chive.pub · 04/03/2026
Our first deep dive is on Chive's backbone: the knowledge graph.
chive.leaflet.pub
Chive's knowledge graph - Chive
How Chive's community-governed knowledge graph replaces hardcoded categories with a portable, extensible vocabulary.
170
Chive @chive.pub · 04/03/2026
We're ramping up our alpha, and we'd love for you to join at chive.pub! Since we launched back in January, we've been adding a ton of fun features; and to introduce them, we're going to be doing a series of deep dives over the next couple weeks on chive.leaflet.pub.
chive.leaflet.pub
What Chive is - Chive
A decentralized eprint service on AT Protocol where your papers, reviews, endorsements, annotations, and collections live in your PDS.
33511
Reposted by Chive
Layers @layers.pub · 03/03/2026
Layers (v0.5.0) now has a pub.layers.changelog lexicon for targeted semantic versioning of all data and metadata components in the pub.layers namespace. docs.layers.pub/lexicons/cha... We've also documented plans for developing an AppView. docs.layers.pub/appview/ Discussion welcome.
docs.layers.pub
pub.layers.changelog | Layers Documentation
Structured changelog records for tracking changes to any Layers record. Adapted from Chive's pub.chive.eprint.changelog pattern but generalized to target any of the 26 pub.layers.* record types, with ...
041
Reposted by Chive
ATProto Science @atproto.science · 02/03/2026
The agenda for #ATScience is up! Check out the speaker list and full schedule below 👇 The range and quality of proposals we received really exceeded our expectations - thanks to everyone who submitted something! March 27, Vancouver - can't wait to see you there ✨ Sessions include >
atproto.science
ATScience 2026
A full-day exploration of AT Protocol for science, education, and open knowledge. A side event to AtmosphereConf 2026 @ Vancouver, March 27, 2026
24423
Reposted by Chive
Layers @layers.pub · 01/03/2026
Layers (v0.4.0) now has a full set of XRPC queries with domain-specific filter parameters for every record type, and a major simplification to the way segmentation works. Github: github.com/layers-pub/l... Docs: docs.layers.pub
github.com
GitHub - layers-pub/layers: Composable ATProto lexicons for linguistic annotation
Composable ATProto lexicons for linguistic annotation - layers-pub/layers
152
Reposted by Chive
Aaron Steven White @aaronstevenwhite.io · 27/02/2026
Been tinkering with schemas for sharing language data over ATProto (the technology that underlies bluesky). Trying to support everything from acceptability and inference judgments to interlinear glossing to syntactic parses to eye and neural recordings. Discussion and comments appreciated. 🐦️🐦️
2186
Reposted by Chive
Layers @layers.pub · 27/02/2026
Layers is a set of ATProto lexicons for representing and interlinking linguistic data across modalities. We're hoping to get feedback on a draft proposal for the lexicons. docs.layers.pub github.com/layers-pub/layers
github.com
GitHub - layers-pub/layers: Composable ATProto lexicons for linguistic annotation
Composable ATProto lexicons for linguistic annotation - layers-pub/layers
4166
Reposted by Chive
Aaron Steven White @aaronstevenwhite.io · 24/02/2026
@chive.pub now has automated citation extraction and similarity scoring!
The citations tab for an eprint on Chive showing automatically extracted citations.The related tab for an eprint on Chive showing automated similarity scoring.
031
Chive @chive.pub · 23/02/2026
No support for DOI minting at the moment, but it’s on the list.
010
Chive @chive.pub · 23/02/2026
Shipping automated citation extraction and paper relatedness features.
110
Chive @chive.pub · 23/02/2026
Should only be brief as a new deployment runs.
110
Chive @chive.pub · 16/01/2026
We're staging application approvals to allow for bug fixes between stages. If you have already applied and are waiting on approval, thanks and we'll try to get you approved as soon as possible!
160
Chive @chive.pub · 15/01/2026
Thanks! Happy to receive issues or discussions around anything like this: github.com/chive-pub/ch...
github.com
GitHub - chive-pub/chive: Decentralized eprints on ATProto
Decentralized eprints on ATProto. Contribute to chive-pub/chive development by creating an account on GitHub.
120
Chive @chive.pub · 15/01/2026
Yes! We actually have a @semble.so backlinking service as one of our builtin plugins! Other integrations can be added using our plugin system.
160
Chive @chive.pub · 15/01/2026
Fixing it now!
010
Chive @chive.pub · 15/01/2026
We're fixing this issue now.
120
Chive @chive.pub · 15/01/2026
Right. It also has a knowledge graph stored in a centralized PDS that can be expanded by community proposal/voting, where proposals and votes live in user PDSes. Papers, authors, fields, and institutions are all nodes that can be typed against concepts imported from external graphs like Wikidata.
030
Chive @chive.pub · 15/01/2026
Chive alpha applications are now live at chive.pub!
chive.pub
Chive | Decentralized Eprint Service
Decentralized eprints on ATProto.
2265