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catarinacarolina.bsky.social

@catarinacarolina.bsky.social
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Reposted by @catarinacarolina.bsky.social
Marnix Medema @marnixmedema.bsky.social · 19/03/2026
Check out this blog from @catarinacarolina.bsky.social on the story behind the paper: communities.springernature.com/posts/making... A story of overcoming challenges, careful engineering and collaborative teamwork.
communities.springernature.com
Making biosynthetic diversity clustering scalable and accessible: the creation journey behind the new versions of BiG-SCAPE and BiG-SLiCE
The software tools BiG-SCAPE 2.0 and BiG-SLiCE 2.0 provide an improved framework for scalable, accurate and interactive metabolic gene cluster diversity analysis. Read here how the paper came together...
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Reposted by @catarinacarolina.bsky.social
Marnix Medema @marnixmedema.bsky.social · 26/02/2026
Now out in @natcomms.nature.com : versions 2.0 of both BiG-SCAPE and BiG-SLiCE! With significant speed and accuracy increases, as well as new interactive functionalities. Read the full paper here #openaccess: www.nature.com/articles/s41...
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Reposted by @catarinacarolina.bsky.social
Mitja M. Zdouc @mmzdouc.bsky.social · 11/12/2025
Have you ever used a #bioinformatics #database and were frustrated by its lack of coverage? Did you ever think about starting your own resource? We just published a new strategy for community-driven #biocuration, based on our experiences with the #MIBiG database (1/8)! doi.org/10.1093/bib/...
doi.org
Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0
Abstract. Biocuration is essential to transform molecular sequence data into standardized, machine-readable resources. Such curated datasets enable compara
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Reposted by @catarinacarolina.bsky.social
Marnix Medema @marnixmedema.bsky.social · 01/09/2025
Now out as preprint: versions 2.0 of both BiG-SCAPE and BiG-SLiCE have been released! With significant speed and accuracy increases, as well as new interactive functionalities. www.biorxiv.org/content/10.1...
biorxiv.org
BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
Microbial metabolic gene clusters encode the biosynthesis or catabolism of metabolites that facilitate ecological specialization, mediate microbiome interactions and constitute a major source of medic...
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Reposted by @catarinacarolina.bsky.social
Mitja M. Zdouc @mmzdouc.bsky.social · 21/08/2025
Into natural product biosynthesis & tailoring enzymes? Frustrated by the lack of a dedicated resource to explore their functions? Tired of endless literature searches for reaction info? Meet the MITE database, freely available at mite.bioinformatics.nl. Preprint: doi.org/10.26434/che... (1/8)
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