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CAPRI

@capridock.bsky.social
195 followers 3 following 14 posts

The community-wide CAPRI protein docking and assembly modeling experiment

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CAPRI @capridock.bsky.social · 22/01/2026
We are happy to announce CAPRI Round 62, featuring a total of nine antigen/antibody targets. Registration opens tomorrow, Jan 23rd. The targets will be offered in two prediction periods, with prediction of the first five targets starting Feb 16th, and of the last four targets starting Mar 16th.
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CAPRI @capridock.bsky.social · 19/09/2025
A new CAPRI round is coming up with 4 antibody-antigen targets! The registration opens next Monday (Sept. 22nd). Check it out at www.ebi.ac.uk/pdbe/complex...
ebi.ac.uk
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
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Reposted by CAPRI
Marc Lensink @marclensink.bsky.social · 15/09/2025
Navigating the pre- and post-AlphaFold divide: CAPRI 8th evaluation meeting www.authorea.com/users/348903...
authorea.com
Navigating the Pre- and Post-AlphaFold Divide: CAPRI 8th evaluation meeting, February 12-14, Grenoble, FR
Navigating the Pre- and Post-AlphaFold Divide: CAPRI 8th evaluation meeting, February 12-14, Grenoble, FRAlexandre M.J.J. Bonvin1 and M. F. Lensink21 Bijvoet Centre for Biomolecular Research, Faculty ...
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CAPRI @capridock.bsky.social · 28/05/2025
We are happy to announce CAPRI Round 60, with one target: an antibody-peptide complex. Registration is open. Prediction starts June 9th. www.ebi.ac.uk/pdbe/complex...
ebi.ac.uk
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
043
CAPRI @capridock.bsky.social · 19/12/2024
After a busy CASP/CAPRI year we resume our rolling CAPRI rounds, announcing the 1st target of 2025. It consists of an antibody-glycan complex. The glycan is heptyl α-D-mannopyranoside. Registration for this target is now open. pdbe.org/capri
pdbe.org
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
054
Reposted by CAPRI
Marc Lensink @marclensink.bsky.social · 12/12/2024
Early December, the CASP16 Meeting was held in the Palladium resort in Punta Cana, Dominican Republic. Nick Grishin, myself, and Qian Qong presented the assessment of the monomeric structure predictions, the assembly predictions and of monomers in their oligomeric context. 1/n
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CAPRI @capridock.bsky.social · 02/12/2024
CAPRI conclusions from the CASP16 assembly session
CAPRI conclusions from the CASP16 assembly session
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CAPRI @capridock.bsky.social · 02/12/2024
Improvement in performance with availability of MassiveFold data. Round 58 (CASP stage2 vs stage1)
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CAPRI @capridock.bsky.social · 02/12/2024
CAPRI ranking on relative model quality (highlighting predictors that do well on the more difficult targets)
CASP16 CAPRI ranking on relative model quality
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CAPRI @capridock.bsky.social · 02/12/2024
The CAPRI ranking on absolute model quality for CAPRI Round 57 (CASP16 session)
CASP16 CAPRI ranking on absolute model quality
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Alexandre Bonvin @amjjbonvin.bsky.social · 02/12/2024
And the main conclusions for this years multimer predictions
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CAPRI @capridock.bsky.social · 25/11/2024
How much has the protein assembly modeling field progressed the past two years? At the CASP16 conference in Punta Cana early December we will present the results of the CASP/CAPRI joint blind prediction round: Round 57 (normal), Round 58 (with MassiveFold data) and Scoring (also with MassiveFold)
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Marc Lensink @marclensink.bsky.social · 11/11/2024
MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling. Out now. www.nature.com/articles/s43...
nature.com
MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling - Nature Computational Science
Although AlphaFold is very efficient for protein structure prediction, massive sampling is a very GPU demanding task. MassiveFold overcomes this limitation, being capable of parallelizing structure pr...
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CAPRI @capridock.bsky.social · 01/05/2024
CASP16 / CAPRI Round 57 has started. The first target was released today.
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Marc Lensink @marclensink.bsky.social · 17/03/2024
www.sciencedirect.com/science/arti...
sciencedirect.com
CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes
Protein interactions are essential for cellular processes. In recent years there has been significant progress in computational prediction of 3D struc…
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Marc Lensink @marclensink.bsky.social · 31/10/2023
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment doi.org/10.1002/prot...
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CAPRI @capridock.bsky.social · 14/11/2023
Welcome to the bluesky presence of the community-wide CAPRI protein docking and assembly modeling experiment. Please note the 8th CAPRI assessment meeting will be held Feb 12-16 in Grenoble, France, back-to-back with the Integrative Computational Biology meeting. Details to follow.
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