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Biotite

@biotite.bsky.social
54 followers 1 following 8 posts

This Python package is your Swiss army knife for bioinformatics. It allows easy and fast analysis of sequence and biomolecular structure data.

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Biotite @biotite.bsky.social · 19/06/2026
Biotite 1.7 has just been released. This release initiates the quest of migrating Cython code to Rust, bringing more safety, cleaner code and often much higher performance. Also now each and every function has type annotations. For all improvements see github.com/biotite-dev/...
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Biotite @biotite.bsky.social · 16/03/2025
Biotite 1.2 connects to the bioinformatics ecosystem with seamless interfaces to @rdkit.bsky.social, #PyMOL and @openmm.org. Below you see a simple MD simulation of lysozyme combining the interfaces to OpenMM and PyMOL. The full changelog is available at github.com/biotite-dev/... #Bioinformatics
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Biotite @biotite.bsky.social · 16/03/2025
Biotite 1.2 provides new tools for the evaluation of structure predictions, namely lDDT and TM-score. Download of structure models from @ebi.embl.org #AlphaFold DB is also possible. #Bioinformatics
Comparison of lDDT and pLDDT of a predicted structure model
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Biotite @biotite.bsky.social · 01/01/2025
Playing with the new WIP interface from @biotite.bsky.social to @rdkit.bsky.social. Here an AtomArray for a cyclotide protein was converted into a Mol object with a single function call. #Bioinformatics #Cheminformatics
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Biotite @biotite.bsky.social · 25/12/2024
Biotite 1.1 is now out and unleashes Biotite's alignment functions on more data! Now you can use position-specific scoring matrices for sequence profiles and convert structures to structural alphabets, such as the popular Foldseek 3Di alphabet. github.com/biotite-dev/... #Bioinformatics
github.com
Releases · biotite-dev/biotite
A comprehensive library for computational molecular biology - biotite-dev/biotite
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Biotite @biotite.bsky.social · 27/08/2024
Biotite 1.0 has been finally released! A big thanks to all contributors who helped building this package! Besides the removal of deprecated API, this packages brings support for NumPy 2.x and a brand new documentation design: www.biotite-python.org.
biotite-python.org
Biotite documentation — Biotite
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