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Bilal Sharif

@bilalbioinfo.bsky.social
17 followers 27 following 0 posts

Postdoc at Centre for Palaeogenetics, Stockholm Lead computational biologist at GenomeVault, Stockholm

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Reposted by Bilal Sharif
J. Camilo Chacón-Duque @jcchacond.bsky.social · 05/08/2026
🧵 New preprint: Have you ever tried to perform molecular clock dating of ancient mitogenomes using BEAST? Have you struggled using manual tools to create your input files, run your analyses and extract your results? We hope our pipeline provides a solution to this: www.biorxiv.org/content/10.6...
biorxiv.org
MitoDate: a Nextflow pipeline for molecular clock dating and phylogenetic inference using ancient mitogenomes
Summary Ancient DNA studies are increasingly targeting samples that are beyond the limit of radiocarbon dating (>50 thousand years old) and are often difficult or impossible to date using other geochr...
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Reposted by Bilal Sharif
Centre for Palaeogenetics @cpgsthlm.bsky.social · 21/04/2026
We present DNAharvester 🎉🦴🚜🧬 A pipeline to process highly degraded ancient DNA data that integrates metagenomic filtering, competitive mapping, multiple alignment strategies, reference bias evaluation and much more. GitHub: github.com/NBISweden/DN... Preprint: www.biorxiv.org/content/10.6...
DNAharvester's workflow.
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