iiinova — where your digital self keeps evolving

Reposted by Benjamin Rombaut

Louise Deconinck @louisedck.bsky.social · 25/08/2025

We're excited to share that our preprint on anndataR, a new package bringing Python's AnnData to R, is now available on bioRxiv 🎉 🔗 Read the paper: www.biorxiv.org/content/10.1... 💻 Check the package in action: anndatar.data-intuitive.com

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Reposted by Benjamin Rombaut

scverse @scverse.bsky.social · 04/03/2025

Join us at 18:00 CET, March 4, Benjamin Rombaut will speak about Harpy, a spatial proteomics tool, as well as other tools from the Saeys lab! For more information, check out the Github: buff.ly/3XnViQl , and lab website: buff.ly/3XlL6HX ! Find the zoom link here: buff.ly/3CArAjJ !

buff.ly

GitHub - saeyslab/harpy: Single-cell spatial proteomics analysis that makes you happy!

Single-cell spatial proteomics analysis that makes you happy! - saeyslab/harpy

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Reposted by Benjamin Rombaut

scverse @scverse.bsky.social · 28/02/2025

This Tuesday at 2025-03-04 18:00 CET, Benjamin Rombaut @berombau.bsky.social will speak about Harpy, a spatial proteomics tool, as well as other tools from the Saeys lab @saeyslab.bsky.social ! For more information, check out the Github: buff.ly/3XnViQl , and lab website: buff.ly/3XlL6HX !

github.com

GitHub - saeyslab/harpy: Single-cell spatial proteomics analysis that makes you happy!

Single-cell spatial proteomics analysis that makes you happy! - saeyslab/harpy

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Reposted by Benjamin Rombaut

Schapiro Lab @schapirolab.bsky.social · 30/01/2025

We are searching for a highly motivated and talented computational postdoc with an interest in translational spatial omics to join our team in Heidelberg. Apply now! karriere.klinikum.uni-heidelberg.de/index.php?ac...

karriere.klinikum.uni-heidelberg.de

Postdoc – Computational Tissue Analysis (m/f/d)

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Reposted by Benjamin Rombaut

scverse @scverse.bsky.social · 20/01/2025

@berombau.bsky.social Grzegorz Bokota, Tong Li SpatialData is already built on top of performant technologies, but we want to improve it even more! We created performance benchmarks and started optimizing the datasets subsetting operations. We also...

A presenter showing the title slide for the “Scalability and benchmarking” hackathon track.

graph obtained from a Python profiler to identify the computational bottleneck for the spatial subsetting operation.

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Reposted by Benjamin Rombaut

Bioconductor @bioconductor.bsky.social · 09/01/2025

✍️ New Bioconductor blog post on the SpatialData hackathon and workshop, organized by buff.ly/4j1UidT with Bioconductor participation. Check it out: buff.ly/4fM1qrH Thanks @arturmansl.bsky.social‬ ! #Bioconductor #SpatialData #scverse #Bioinformatics #OpenScience #RStats

buff.ly

2024 SpatialData Workshop – Bioconductor community blog

R/Bioconductor developers participating in the 1st scverse SpatialData Workshop

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