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Arda Söylev

@asoylev.bsky.social

41 followers 39 following 3 posts

Genomics, bioinformatics, algorithms

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Arda Söylev @asoylev.bsky.social · 30/07/2026

@tobiasmar.bsky.social @samarendra-pani.bsky.social and fawaz dabbaghie Code: github.com/marschall-lab/gaftools

github.com

GitHub - marschall-lab/gaftools: General purpose utility related to GAF files

General purpose utility related to GAF files. Contribute to marschall-lab/gaftools development by creating an account on GitHub.

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Arda Söylev @asoylev.bsky.social · 30/07/2026

Finally out, after ~18 months in review: gaftools: a toolkit for pangenome graph alignments in GAF format. It orders the graph, then indexes, sorts, views and realigns alignments on it, much like SAMtools does for linear genomes. doi.org/10.1093/bioi...

doi.org

gaftools: a toolkit for analyzing and manipulating pangenome alignments

AbstractMotivation. Linear reference genomes are ubiquitously used in genomics research, despite known biases associated with their use. In recent years, t

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Reposted by Arda Söylev

A. Murat Eren (Meren) @merenbey.bsky.social · 04/07/2026

New study by Alexander Henoch (@ahenoch.bsky.social), a PhD student in our group @hifmb.de and @awi.de, shows what it takes to bring gene synteny into microbial pangenomes, and what we learn about the variability landscape of genomes when we do that. See the pre-print here: doi.org/10.64898/202...

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Reposted by Arda Söylev

CompEvo & HumanG Labs @compevohumang.bsky.social · 25/07/2025

🚨 Big news! Our group member @asoylev.bsky.social co-authored two groundbreaking papers in @nature.com! 🧬 Here’s what they achieved 👇

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Arda Söylev @asoylev.bsky.social · 24/07/2025

Excited to be part of two papers published in @nature.com on the same day! Both are valuable resources for future genomics research.

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