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ARTIC network

@artic.network

312 followers 40 following 43 posts

Putting genomic surveillance at the heart of outbreak response. Funded by the Wellcome Trust and the Gates Foundation.

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ARTIC network @artic.network · 12/02/2026

ARTIC 2 measles resources are live! As part of the Wellcome Trust funded ARTIC 2 project we have developed a collection of measles virus resources that are now openly available at artic.network/viruses/mev

A webpage section listing three resources related to measles virus genomic epidemiology. The first item shows an icon and the heading ‘Measles virus genomic epidemiology’ with a subheading ‘A primer on measles virus genomic epidemiology and why we do it.’ The second item shows an icon and the heading ‘artic-measles/400/v1.0.0 Primer Scheme’ with a description of the ARTIC-network primer scheme for sequencing measles virus. The third item shows an icon and the heading ‘ARTIC-network MEV wet-lab protocol’ with a description of the wet-lab protocol for sequencing MEV using the artic-measles/400/v1.0.0 primer scheme.

A webpage section titled ‘User‑interface pipelines using Epi2me,’ displaying four items. The first item shows an icon with the heading ‘amplicon‑nf: Running the pipeline in EPI2ME’ and describes using EPI2ME to run the ARTIC amplicon‑nf pipeline without the command line. The second item shows an icon with the heading ‘amplicon‑nf: Running the pipeline in EPI2ME for Illumina Data,’ again describing use of EPI2ME to run the amplicon‑nf pipeline without the command line. The third item shows an icon with the heading ‘amplicon‑nf: Running the pipeline in EPI2ME for Oxford Nanopore Data,’ with the same description. The fourth item shows an icon with the heading ‘amplicon‑nf: Viewing outputs of the pipeline in EPI2ME,’ describing how to view outputs of the amplicon‑nf pipeline within EPI2ME.

A webpage section titled ‘Command line interface pipeline SOPs.’ The first item shows an icon with the heading ‘Fieldbioinformatics: viral amplicon sequencing bioinformatics SOP’ and labels indicating ‘Nanopore | bioinformatics.’ A second section titled ‘Phylogenetics and Interpretation’ includes an icon with the heading ‘MeV Phylogenetics’ and a description stating it contains resources and protocols for measles virus alignment and phylogenetics.

ARTIC network @artic.network · 24/03/2025

Earlier this month ARTIC, together with Asia PGI, were hosted by the Ministry of Public Health in Bangkok, to conduct a regional training workshop of #MPOX #genomicsurveillance, organised by the South-East Asian WHO office, with attendees from 8 countries.

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ARTIC network @artic.network · 27/08/2024

ARTIC #mpox resources! Guides to setup #sequencing #bioinformatics and #analysis artic.network/mpxv/resources #wellcometrust #nanopore #illumina #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology

ARTIC network @artic.network · 23/08/2024

Watch this space! ARTIC tools & resources for #mpox sequencing and analysis coming very soon! #wellcometrust #nanopore #illumina #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing

ARTIC network @artic.network · 23/08/2024

Today ARTIC provided bioinformatics and phylogenetics training to an #mpox workshop hosted by INRB in DRC, with participants from 8 countries #genomicsurveillance #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing

ARTIC network @artic.network · 15/07/2024

The global reach of the ARTIC Network! Users and collaborators across 5 continents! #molecularepidemiology #pathogen #pathogensurviellance #metagenomics #bioinformatics #epidemiology #nanopore #virus #outbreak #clinicalvirology #sequencing

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ARTIC network @artic.network · 23/05/2024

The ARTIC gang at the #nanoporeconf #oxfordnanopore #sequencing #genomicepidemiology

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ARTIC network @artic.network · 22/05/2024

ARTIC at the #nanoporeconf