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Annie G West

@anniegwest.bsky.social
224 followers 238 following 13 posts

Postdoctoral Research Fellow @ University of Edinburgh 🦠 Ancient Microbiomes 🧬 Dabbling in PopGen 🐻 Population Declines 🐾 previously @ University of Auckland 🇳🇿 Avid hiker and book worm 🐛 anniegwest.wixsite.com/anniegwest

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Annie G West @anniegwest.bsky.social · 21/08/2026
Had a great time at #ISME20 connecting with old friends and making new connections. Till next time, ka kite anō!
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Katerina Guschanski @kguschan.bsky.social · 23/06/2026
Couldn’t be happier about contributions by group members at #ICP2026 #museomics session! @markella-morait.bsky.social presented on oral #microbiome evolution in mammals, @johnlrichards.bsky.social talked about historical #AMR & @anniegwest.bsky.social had a poster on microb in declining populations
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Annie G West @anniegwest.bsky.social · 23/06/2026
Great intro from @kguschan.bsky.social on the wonderful world of museomics at #ICP2026 @palaeogenomics.bsky.social. My poster is tonight if you want to come have a chat, stop by board 160 😁
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Markella Moraitou @markella-morait.bsky.social · 21/06/2026
My main PhD paper is out on bioRxiv! 🎉 The microbiomes of wild animals, besides the gut, remain unexplored. To help remedy this, we used museum-preserved dental calculus to characterise the oral microbiome of 34 diverse mammal species. 💀🦠🦷 Read here: www.biorxiv.org/content/10.6...
Phylum-level composition of the oral microbiome across 34 mammal species, representing 8 taxonomic orders, 4 dietary categories, and including 3 marine species.
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SPAAM @spaam-community.bsky.social · 07/11/2025
Dear SPAAM Community members, We are excited to share with you the latest SPAAM Newsletter! Inside, you’ll find: - updates on events and workshops - funding/research opportunities - latest publications We hope you enjoy this edition! www.spaam-community.org/assets/media...
spaam-community.org
SPAAM Newsletter #7
Hello from the SPAAM Steering Committee!
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Annie G West @anniegwest.bsky.social · 28/10/2025
anniegwest.wixsite.com/anniegwest/p...
anniegwest.wixsite.com
New kākāpō paper out!
PhD student Natalie Ayriss has done fabulous work analysing RNA-seq data of cloacal swabs obtained from adult and juvenile kākāpō to explore the virome and antibiotic resistance in the microbiome of t...
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Tom Booth @boothicus.bsky.social · 25/09/2025
Great News! The Ricardians are one step closer to recreating Richard III’s unique brand of halitosis! 🏺 www.biorxiv.org/content/10.1...
biorxiv.org
The oral microbiome of King Richard III of England
Metagenomic investigation of archaeological dental calculus has provided insights into the changing oral health, disease, and diet of past human societies, but little is known about the oral microbiot...
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Hui Zhen Tan @huizhentan.bsky.social · 03/09/2025
Genomic imputation can boost dataset quality and benefit research on wild populations. In hihi, we found high #imputation accuracies despite a small reference panel of high-fecundity individuals. Imputation improves downstream #ConservationGenomics analyses. onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
High Imputation Accuracy Can Be Achieved Using a Small Reference Panel in a Natural Population With Low Genetic Diversity
Genotype imputation, the inference of missing genotypes using a reference set of population haplotypes, is a cost-effective tool for improving the quality and quantity of genetic datasets. Imputation...
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SPAAM @spaam-community.bsky.social · 15/09/2025
What can a million-year-old mammoth teach us about microbes? 🦠 From pathogens to commensals, this new study reconstructs the oldest known host-associated microbial DNA. #MetagenomicsMonday #SPAAM #aDNA doi.org/10.1016/j.ce...
doi.org
Ancient host-associated microbes obtained from mammoth remains
Ancient genomic studies have extensively explored human-microbial interactions, yet research on non-human animals remains limited. In this study, we a…
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Center for Evolutionary Hologenomics @hologenomics.bsky.social · 11/09/2025
📣Another publication from our amazing researchers and colleagues: The Earth Hologenome Initiative: Data Release 1 @ehologenome.bsky.social 🦠💡 Find it in @gigascience.bsky.social 👇
academic.oup.com
The Earth Hologenome Initiative: Data Release 1
AbstractBackground. The Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from
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Annie G West @anniegwest.bsky.social · 10/09/2025
One of the seminal projects from my Genomics Aotearoa Postdoc position with Associate Professor Kim Handley is now published online at @isme-microbes.bsky.social Communications!! 🥳🦠 "Salinity-driven niche differentiation within the aquatic Luna-1 subcluster"
anniegwest.wixsite.com
New publication!
One of the seminal projects from my Genomics Aotearoa Postdoc position with Associate Professor Kim Handley is now published online at ISMEJ Communications. The background behind this particular paper is that we found clear niche differentiation of two Actinomycetota sister lineages (Aquiluna and Rhodoluna) across the saline divide of the Waiwera River estuary. As both lineages were initially described and isolated from freshwater environments, this natural population represented a great opportu
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Annie G West @anniegwest.bsky.social · 04/09/2025
In the thick of the 2025 @femsmicro.org Postdoc Summer School in Ohrid, meeting amazing colleagues and ready for a week of solid learning
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Annie G West @anniegwest.bsky.social · 30/08/2025
Trying to get better at updating my new website, so here is the latest blog post! #eseb2025 anniegwest.wixsite.com/anniegwest/p...
anniegwest.wixsite.com
ESEB2025 Barcelona
This was my very first ESEB conference, and as a microbial ecologist I was thoroughly impressed with the breadth of research and fields showcased this year! The Guschanksi group was (almost) out in fu...
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Annie G West @anniegwest.bsky.social · 20/08/2025
Relatable #eseb2025
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Annie G West @anniegwest.bsky.social · 17/08/2025
If you're interested in bears, metagenomics, or struggling to understand a kiwi accent, come sit in on my @eseb2025.bsky.social ESEB Barcelona talk Monday morning at 11:30 in room 116 :D
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Annie G West @anniegwest.bsky.social · 04/06/2025
Thoroughly enjoying the @eventswcs.bsky.social K-mers for Biodiversity workshop this week, complete with extensive k-mer history, hands-on practical exercises, showcasing the latest software, and meeting people from all over the world. What a blast! (pun intended...)
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Andrew Digby @digs.bsky.social · 10/03/2025
Our team on Te Kākahu/Chalky Island have recaptured male #kakapo Te Awa, who's been missing for 6 years having dropped his transmitter. He was in great condition and it's good to have track of him again with a possible breeding season next year. 📷: Petrus Hedman #conservation #parrots #birds
Two rangers doing a health check on a kākāpō at night. Credit: Petrus Hedman.
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Kevin Daly @gingerhowley.bsky.social · 10/03/2025
Working in animal #aDNA? Present your research at our first AaRConference!
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PopGen Vienna @popgenviennaphd.bsky.social · 13/02/2025
The PopGen Vienna Seminar series schedule is ready for the next term (Mar-Jun). It's jam-packed with fantastic speakers in #evolution, #genetics, #genomics, #popgen, and more! Details and streaming link signup can be found on our website www.popgen-vienna.at/news/seminars/
PopGen Seminar Series
Summer Term 2025

04.03.25 – Lutz Becks (Univ. of Konstanz, DE)
The evolutionary dynamics of novel endosymbiosis.
11.03.25 – Ilkka Kronholm (Univ. of Jyväskylä, FI)
How chromatin structure influences genetic and epigenetic variation.
18.03.25 – Katja Hoedjes (Vrije Univ. Amsterdam, NL)
Understanding functional impact of genetic variation on complex traits at a single nucleotide resolution.
25.03.25 – Sophie Armitage (Freie Univ. of Berlin, DE)
Evolutionary ecology of host-pathogen interactions.
01.04.25 – Matthew Rockman (New York Univ., US)
Developmental evolution is a population-genetics problem.
08.04.25 – Wen-Juan Ma (Vrije Univ. Brussels, BE)
The evolution of sex chromosomes and sex determination in frogs.
15.04.25 – Almorò Scarpa (Vetmeduni, AT)
Two centuries of transposable element invasions in Drosophila melanogaster
22.04.25 – Julia Kreiner (Univ. of Chicago, US)
The mode and tempo of genomic adaptation to contemporary agriculture.
29.04.25 – Martin Kaltenpoth (Max Planck Inst. for Chemical Ecology, DE)
Microbial symbionts as sources of evolutionary innovations in beetles.
06.05.25 – Luisa Pallares (Friedrich Miescher Laboratory, DE)
Phenotypic robustness across the genotype-phenotype map, from genes to environment and back.
13.05.25 – Diana Rennison (Univ. of Calif., San Diego, US)
Understanding the predictability of evolutionary trajectories using threespine stickleback.

20.05.25 – Filipa Sousa (Univ. of Vienna, AT)
Bioenergetics Evolution: The link between Earth’s and Life’s history.
27.05.25 – Yun Song (Univ. of California, Berkeley, US)
Learning and applying complex probability distributions over biological sequences.
03.06.25 – April Wei (Cornell Univ., US)
Enabling efficient analysis of biobank-scale data with genotype representation graphs.

ALT TEXT OUT OF SPACE, GO TO https://www.popgen-vienna.at/news/seminars/
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Katerina Guschanski @kguschan.bsky.social · 02/03/2025
3-y postdoc position in (meta)Genomics of Population Declines elxw.fa.em3.oraclecloud.com/hcmUI/Candid.... If you have experience with low-coverage genomic data, care about biodiversity loss, want to understand host-microbiomes interactions, this post is for you! #museomics #ancientDNA #mammals
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