iiinova — where your digital self keeps evolving

Ali Altıntaş @altintasali.bsky.social · 05/01/2026

🚨 Deadline: Jan 11, Sunday 📢 Don’t miss your chance to join the PhD course “ #Bioinformatics Analysis of #Gene #Expression Data from Bulk #RNAseq” at University of Copenhagen! 📅 26 Jan – 12 Feb 2026 👉 Apply here: phdcourses.ku.dk/DetailKursus...

phdcourses.ku.dk

Graduate School of health and Medical Sciences

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Ali Altıntaş @altintasali.bsky.social · 03/12/2025

🔔 Excited to teach the PhD course “Bioinformatics Analysis of Gene Expression Data from Bulk RNA-seq” at University of Copenhagen! 📅 26 Jan – 12 Feb 2026 👍 Bring your own data (or use a public one) and learn the full RNA-seq pipeline:

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Ali Altıntaş @altintasali.bsky.social · 10/11/2025

🌍 Excited to be part of this global effort! 🦠 Microbial and metabolic diversity was mapped across 51 vivaria & 12 wild colonies, revealing striking functional convergence despite taxonomic divergence. 🔗 www.cell.com/cell-host-mi...

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Ali Altıntaş @altintasali.bsky.social · 20/10/2025

🚨 Dealing with sparse, noisy single-cell DNA methylation data (scBS-seq)? Check out #scDMV. It uses a zero-one inflated beta mixture model to tackle the excess of 0s/1s and low coverage, boosting accuracy in identifying differentially methylated regions (DMRs).

academic.oup.com

scDMV: a zero–one inflated beta mixture model for DNA methylation variability with scBS-seq data

AbstractMotivation. The utilization of single-cell bisulfite sequencing (scBS-seq) methods allows for precise analysis of DNA methylation patterns at the i

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Ali Altıntaş @altintasali.bsky.social · 05/09/2025

On the art of great article titles: this one’s dedicated to all the Reviewer 2s out there. 🔗 onlinelibrary.wiley.com/doi/10.1111/...

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Ali Altıntaş @altintasali.bsky.social · 26/08/2025

❓ How do you know if a gene is expressed or not in a certain tissue/organ? 👉 If you are interested in animals, #Bgee database is the first place to go. 52 species, several tissues/organs... www.bgee.org

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Ali Altıntaş @altintasali.bsky.social · 11/08/2025

Before running your statistical test, double-check that its assumptions hold. Violations can lead to misleading results. Here's a handy tool to help: 🔗 ahmed-bargheet.shinyapps.io/AssumpSure ℹ️ github.com/Ahmedbarghee... #rstats #shiny #r

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Ali Altıntaş @altintasali.bsky.social · 05/08/2025

"A drunk man will find his way home, but a drunk bird may get lost forever." -Shizuo Kakutani

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Ali Altıntaş @altintasali.bsky.social · 01/08/2025

🚨Our latest: HIF1α mediates circadian regulation of skeletal muscle metabolism and substrate preference in response to time-of-day exercise ⏰💪 📄 www.pnas.org/doi/10.1073/...

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Ali Altıntaş @altintasali.bsky.social · 28/05/2025

A nice #R package to visualize #bullseye plots: 🔗 cran.r-project.org/web/packages... ❓ Did you notice the Simpson's paradox?

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Ali Altıntaş @altintasali.bsky.social · 19/05/2025

Are you developing an R package? Great tips ahead ⬇️ journals.plos.org/ploscompbiol...

journals.plos.org

Eleven quick tips for writing a Bioconductor package

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Ali Altıntaş @altintasali.bsky.social · 07/04/2025

📢 RNA-seq users! RPKM/TPM are NOT always comparable across samples/projects. They're relative within a sample. rnajournal.cshlp.org/content/26/8...

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