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Alan Yocca

@aeyocca.bsky.social
431 followers 219 following 65 posts

Genomics Data Scientists @ Bayer Crop Science All things bioinformatics and plant genome evolution

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Alan Yocca @aeyocca.bsky.social · 19/08/2026
Yea you need a lot more, I could knock that out in about seven minutes
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Alan Yocca @aeyocca.bsky.social · 14/06/2026
The Atlanta Hawks were the second best team in the playoffs this year. The transitive property of sports is never wrong.
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Alan Yocca @aeyocca.bsky.social · 26/05/2026
Great news! Plant scientist Dr. May Zelensky recently bred a corn line that matures around this time of year. In the coming years I'm really looking forward to May's Maize Maze Mays.
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Alan Yocca @aeyocca.bsky.social · 22/05/2026
I need a copy of PERSIMMONS FOR EVERYONE
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Alan Yocca @aeyocca.bsky.social · 07/05/2026
Why yes, much data. Many insights. #ggplotfail
ggplot principal components analysis with 24 overlapping circles
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Alan Yocca @aeyocca.bsky.social · 15/04/2026
Getting that last line tattooed
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Alan Yocca @aeyocca.bsky.social · 30/03/2026
It also doesn't say he put the lid back on before shaking the salad...
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Alan Yocca @aeyocca.bsky.social · 20/03/2026
Birds
Screenshot of a listening session from the merlin app listing the birds I heard in my yard this morning
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Alan Yocca @aeyocca.bsky.social · 20/03/2026
You caught a pair of stray bullets there
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Alan Yocca @aeyocca.bsky.social · 03/03/2026
I have an exceptionally dense mosquito population in my yard and this seems just simple enough for my lazy butt to attempt
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Alan Yocca @aeyocca.bsky.social · 28/02/2026
Is this FOIA-ble? (.. is that still going to exist in three years?)
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Alan Yocca @aeyocca.bsky.social · 03/02/2026
Cups of water, much to the annoyance of Jess. Lately burp cloths, pacifiers, and teething toys
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Alan Yocca @aeyocca.bsky.social · 24/01/2026
The worst part about finishing a book is deciding which book to read next. I have decision paralysis
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Alan Yocca @aeyocca.bsky.social · 19/01/2026
Saw this and saw the post you quoted start with "cow tools" and I thought it was a new bioinformatics program
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Alan Yocca @aeyocca.bsky.social · 08/01/2026
En route to San Diego for #PAG33 with several of my Bayer Crop Science colleagues. I'm excited to see what the genomics community has cooked up over the last year. Don't miss the Bayer-sponsored session on Monday! We have a great lineup of internal and external speakers
Flyer for the "Application of Genetics and Genomics for Large-scale Breeding Programs" session at PAG 33 Monday in room Pacific C at 12:50pm
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Alan Yocca @aeyocca.bsky.social · 04/12/2025
A haiku about my 10 week old son's favorite thing in the world: "Watching you always Calms me down when I am sad Love you, ceiling fan"
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Alan Yocca @aeyocca.bsky.social · 19/11/2025
Got an advertisement for a travel credit card in the mail and uh... The editor must have missed this one
Front page of a travel magazine advertisement reading, "We sent writers to track down unmatchable experiences. An overnight train ride from Venice to Paris. A virtually untouched island where you can actually have it all.
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Alan Yocca @aeyocca.bsky.social · 11/11/2025
Google's AI summary has been mostly helpful with small coding questions but I did run into my first"ghost function" that definitely doesn't exist
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Alan Yocca @aeyocca.bsky.social · 04/11/2025
I will NOT be voting for Mamdami today! Firstly because his name is spelled Mamdani. Secondly because I'm not a resident of NYC, but I would if I could. I'm excited to get out and vote in my local elections today though, and you should be too.
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Alan Yocca @aeyocca.bsky.social · 21/10/2025
In my last week of paternity leave and I opened my work laptop to take a peak. 222 emails and 80 teams messages. Not too bad I guess?
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Alan Yocca @aeyocca.bsky.social · 22/08/2025
Maybe try different ploidy levels, smdugeplot, or if you have enough compute k=55
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Alan Yocca @aeyocca.bsky.social · 14/07/2025
"What do you mean I can't run this insanely inefficient program without interruption for 21 days?"
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Alan Yocca @aeyocca.bsky.social · 24/06/2025
If the dot plot looks the same it's probably a long tandem duplicate, at least 3 copies. Check read coverage in this area also to see if it's real or possibly an assembly error
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Alan Yocca @aeyocca.bsky.social · 01/05/2025
I'm no historian, but a deal for one country to extract natural resources from another country sounds a lot like colonialism
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Reposted by Alan Yocca
Charity lives in the Fascist States of America, Ph.D. @cherrityg.bsky.social · 14/04/2025
A short thread about how the VeRy EffIciEnT DOGE has affected me and my husband personally: Indy was unlawfully fired. - February Indy was rehired, placed on administrative leave, due to judges in California and NY recognizing what DOGE is doing is unlawful. - Mar
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Penguins Against Trump @penguinsagainstdt.bsky.social · 07/04/2025
Most birds have a fight or flight response. He forgot we’re flightless birds.
A meme photo of an Adelie penguin holding an AK-47.
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Reposted by Alan Yocca
Tooey @sueric.bsky.social · 06/04/2025
Millions of people and so many amazing signs. #Handsoff2025
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Alan Yocca @aeyocca.bsky.social · 05/04/2025
The penguin humor is really doing it for me lately, a lone bright spot
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Alan Yocca @aeyocca.bsky.social · 21/03/2025
Rug hanging in the Airbnb I'm staying at. I call it "recurrent whole-genome followed by tandem duplication"
Rug hanging from the wall with flowers connected in what appears to be a phylogenetic tree. Colors of the flowers remind me of a gene tree showing a pattern of whole genome duplication followed by tandem duplication
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Alan Yocca @aeyocca.bsky.social · 15/02/2025
"A person once received treatment at a hospital when they didn't need it, MASSIVE FRAUD!! So we've decided to fire all nurses and cut funding to hospitals by 548%"
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Alan Yocca @aeyocca.bsky.social · 06/02/2025
I was slightly favoring the Chiefs for Sunday, then I remembered Harrison Butlicker existed. #FlyEaglesFly
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Mike Barker @barkerms.bsky.social · 01/02/2025
Join us on Wednesday, February 5, at 11 AM PST for the next #PolyploidyWebinar! This month we have @cherrityg.bsky.social on apomixis and polyploidy in Malus and Christoph Rosche on herbarium specimens and invasive Centaurea! Sign up (if not already!) to get the zoom: www.barkerlab.net/polyweb
A flyer announcing the next polyploidy webinar on February 5, 2025, at 11 AM PST. Links to sign up for the zoom at barkerlab.net/polyweb. Featuring Charity Goeckeritz from the HudsonAlpha Institute on Genomics of triploid apples narrow the search for the genetic basis of apomixis in Malus, and Christoph Rosche from the University of Halle on Herbarium specimens reveal a cryptic invasion of polyploid Centuarea stoebe in Europe.
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Alan Yocca @aeyocca.bsky.social · 29/01/2025
"I think we don't think often enough about their work because it's easy not to celebrate the folks who are protecting you from that which doesn't appear because of the work that they're doing" - Senator Warnock
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Alan Yocca @aeyocca.bsky.social · 29/01/2025
"The CDC is an agency filled with hard working dedicated public health servants. They wake up every single day working to keep us safe."
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Alan Yocca @aeyocca.bsky.social · 28/01/2025
Downloaded the B73 genome for the first time, am I a Maize biologist yet? My dog thinks he's one at least
Dog chewing a toy shaped like corn
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Alan Yocca @aeyocca.bsky.social · 21/01/2025
Made "Coconut Red Curry Sauce and Noodles" I saw on Worst Cooks in America. The reviews said it was a bit bland so I doubled the amount of red curry paste. Its also the first time I've cooked with tofu. Overall id give it a 7/10
Ingredients gathered and sitting on the counter while preparing dinner
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Alan Yocca @aeyocca.bsky.social · 15/01/2025
Another year, another successful trip to #PAG32. Attended several talks that will affect the way I carry out my work for the better. Meeting old friends and making new ones also brings me joy. Though I had a lot of fun, I can't wait to see my dog again 😭. Until next year ✌️
Sunset on Mission Beach in San Diego. My dim silhouette sits idly left of center frame, forgotten adjacent to the setting sun
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Alan Yocca @aeyocca.bsky.social · 13/01/2025
Stop by the Bayer booth at #PAG32 and try to solve the Bayer puzzle hunt for a chance at some sweet botanical legos
Table display of botanical legos
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Alan Yocca @aeyocca.bsky.social · 09/01/2025
Be sure to check out the "Application of Genetics and Genomics for Large-scale Breeding Programs" session organized by Samantha McConaughy and myself Monday at 12:50pm.
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Alan Yocca @aeyocca.bsky.social · 09/01/2025
I'm excited to attend #PAG32 along with several Bayer Crop Science colleagues. Stop by our booth #318 to chat about Health for All, Hunger for None. I would love to chat about anything Eukaryotic genome assembly/annotation, gene regulation, and disease resistance.
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Alan Yocca @aeyocca.bsky.social · 08/01/2025
Had enough doom scrolling for the day so I muted "T**mp" and "Zuc**rb**g" and "Me*a", now my discover feed only has 5 posts on it
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Alan Yocca @aeyocca.bsky.social · 31/12/2024
It helps with data management a bit, eases pipelines that process a lot of genomes at once. Biologically makes zero sense though I'll agree with that
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Alan Yocca @aeyocca.bsky.social · 25/12/2024
Agree with the 1st TD, but the goal post dunk is written into the rules because Jimmy Graham bent it once
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Alan Yocca @aeyocca.bsky.social · 15/12/2024
Lunar halo tonight outside of Pittsburgh. Moonlight reflecting off of ice crystals in cirrus clouds (according to Google). Cool effect I would guess I've seen before but it feels like the first time.
Taken at night time, the bright moon centers the photograph surrounded by a lunar halo. The diameter of the halo is more than ten times that of the moon itself by my estimation. A pair of tree branches below rise from off frame giving the effect they're reaching towards the moon
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Alan Yocca @aeyocca.bsky.social · 13/12/2024
Ah, yea I swear I wrote a Gmail in there, I officially rescind the "bozo" comment 😅
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Alan Yocca @aeyocca.bsky.social · 13/12/2024
Check your emails bozo that's why I made it 😂
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Alan Yocca @aeyocca.bsky.social · 12/12/2024
aeyocca.github.io/PAUP_docker/
aeyocca.github.io
Run PAUP with Docker
A pair of mutuals on Bluesky have recently claimed an error message running the latest version of PAUP on M1 chip Macs. Error messages akin to error while loading shared libraries: libgfortran.so.4
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Alan Yocca @aeyocca.bsky.social · 12/12/2024
Certainly, happy to email if you need it quickly, working on a short blog post at the moment if you'd prefer to wait for that
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Alan Yocca @aeyocca.bsky.social · 12/12/2024
If you're not opposed to using docker and running PAUP on the command line only, I've got a working build file (well, I at least got it to print the help message)
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Reposted by Alan Yocca
Charity lives in the Fascist States of America, Ph.D. @cherrityg.bsky.social · 05/12/2024
Now soliciting advice for sending viable (seed) material to international collaborators and receiving non-viable (dried leaves) material from international collaborators (Czech Republic). The USDA’s website is a tad overwhelming and I’d love to chat with someone with experience! Please help!! 🍎
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