Gaëtan Benoit @gaetanbenoit.bsky.social · 20/04/2026I was investigating the genomes that I didn't manage to convert to near-complete MAGs in my assembly graph (the components in gray). The circle on top left is actually a complete genome but with 40% completeness (both in metaMDBG and myloasm) 293
Gaëtan Benoit @gaetanbenoit.bsky.social · 20/04/2026I blasted-search it and it is actually a Prevotella, so one of its chromosome. The issue is that this chromosome is also alone after binning. Thus this organisms might always be lost after the classical completeness/contamination filter. I don't know if its a common issue even with short reads? 100
Gaëtan Benoit @gaetanbenoit.bsky.social · 20/04/2026I'll give you an update if I find the other chromosome in the graph 🕵️ 120
