Came across this interesting paper www.nature.com/articles/s41... that compares their model to a "Dilated CNN" model from the CRESTED package that is supposed to "ChromBPNet inspired". Performance of the dilated CNN is miserable. This is categorically NOT a ChromBPNet model 3/3
nature.com
IceQream: Quantitative chromosome accessibility analysis using physical TF models - Nature Communications
Cis regulatory elements endow genomes with sequence-encoded logic to drive cellular differentiation. Here, the authors introduce a biophysically principled sequence model that characterises complex TF...
